Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1916 185 2e-41 seq3878 179 7e-40 seq2522 154 3e-32 seq426 141 2e-28 seq3337 120 6e-22 seq1679 96.9 6e-15 >seq1916 Length=1946 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 1136 CCACCGCGCAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1195 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||||||||||||| || || | || |||||||| || Sbjct 1196 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1255 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 1256 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 1315 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 1316 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 1365 >seq3878 Length=33396 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | || | ||| || || || || || |||||||| || ||||| Sbjct 29360 CCTCCGCGCAGGCGAAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 29301 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | ||| |||||||| || Sbjct 29300 AGAGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGG 29241 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || |||||||||| |||||| || Sbjct 29240 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACC 29181 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || || ||||||||||| |||||||| Sbjct 29180 TCAAGCGTGATCGTCTTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134 Score = 143 bits (158), Expect = 5e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || || || |||||||| || ||||| Sbjct 29132 CCACCACGGAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 29073 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | | ||| |||||||| || Sbjct 29072 AGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGG 29013 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || ||||| Sbjct 29012 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTACC 28953 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||||| || || ||||| |||||||||| Sbjct 28952 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 28916 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| |||||| Sbjct 29588 CCGCCACGCAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTC 29529 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| || ||||| || || | || ||||| || || Sbjct 29528 AGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 29469 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| || || | ||||||| ||||| ||||| | || || || Sbjct 29468 ATACCCTCCTTGTCTTGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACC 29409 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || | ||||||||| || || ||||| Sbjct 29408 TCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362 >seq2522 Length=51109 Score = 154 bits (170), Expect = 3e-32 Identities = 681/1053 (65%), Gaps = 74/1053 (7%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| ||| || Sbjct 14374 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAGGCG 14433 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 14434 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 14493 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| ||||||||||| |||||||| |||| |||||| ||||| ||||| || || Sbjct 14494 ACGAGCTCACCGGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCGATG 14553 Query 225161 ACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTTGCTGAAGATCTCAGG--- 225216 ||| |||| ||||| | | | | | ||| || | || ||| ||||| || Sbjct 14554 ACGGCAATACGGGA-GCCGAGGGAGCACTGGAAGGAGATGTC-CTG--GATCTGGGGCTT 14609 Query 225217 GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGTC 225267 || ||| |||| |||| || | ||||||| |||||| | | Sbjct 14610 GCTAGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTGGC 14663 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | |||||| ||||| |||||||||||||| ||| || | | ||| Sbjct 14664 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAGTC 14723 Query 225328 CTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 | || |||||||| || ||||| || || ||| ||||| | ||||| Sbjct 14724 GCTGAGCTCGTAGTAGGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGGTT 14780 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443 || ||| | ||||||||| | || |||| || ||||| || | ||| || Sbjct 14781 ACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACAATGTGTTG-GCAGACGT 14836 Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTG 225502 ||| |||||| ||||||||||||| || |||||||||| || | || ||| Sbjct 14837 TGTCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGACGTGCAAG-------GGGAGTTG 14889 Query 225503 ---AGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558 |||| || | |||||| ||||| | ||||||| |||||| ||||| ||||| Sbjct 14890 CAAAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTC 14948 Query 225559 CAGAAGCAGGATGTCAG---CATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTT 225615 || |||||||| || | | |||| || | || || |||| |||||||| || Sbjct 14949 AAGGAGCAGGATATCGGGGGCCTCAAAGACG---GCACGGCACAGAGCGAGCTTCATCTT 15005 Query 225616 CCAGCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC 225675 ||| || ||||| |||| | ||| | | | | | | ||| |||||| |||| Sbjct 15006 CCAACCACCGGAAAGGGCGGAGATCTCACCCTTGATCATGCCGTCGGTGAAGCCGAACTC 15065 Query 225676 CAGGAGCGT---CTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGT--TGGGG--- 225727 ||| | || || | || ||||| || ||| | || ||| ||| | Sbjct 15066 GTTCAGCTTGGCCTCGACG-TCAGCCTGGGAGGTCT-CGA-CACCAGCGTCCTGGAGCTT 15122 Query 225728 --TC--GGACGAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTG 225783 || || | || | || | |||||| || | | ||| | ||||| |||||| Sbjct 15123 CTTCATGGTCCAGTCG--ATGGT----GGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTG 15176 Query 225784 GTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGC 225843 || ||| | || ||| || || || | |||||| ||||| | ||| | || Sbjct 15177 CTCGACGAAGACGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTT 15236 Query 225844 AATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATT 225903 || || || | ||||| |||||| | |||||||| ||| || ||||| | | Sbjct 15237 GATGGCGCGCATGAGGGTGGACTTGCCGGAACCGTTGGGGCCGCAAAGACCGTAGCGCTG 15296 Query 225904 CCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGA 225963 || ||||||| ||| | || ||| || || |||||| |||| ||||||||||| Sbjct 15297 GCCACGCTTGAGACGAAGGTGAGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCAAGGGA 15356 Query 225964 GAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||| ||| | ||| ||||||||||||||||| Sbjct 15357 GAAGGTGCAGTTGCAAAGGTCCTCACCCTCCTC 15389 >seq426 Length=9009 Score = 141 bits (156), Expect = 2e-28 Identities = 224/315 (71%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||||||||| || |||||||||||| || || ||||||| || || | Sbjct 4133 CCAGTGTGGACGTCTTCCGAGAAGCCAATCTCGGCGGTTCCGCCGACCTCGACGAGGGAT 4192 Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAGAA 59416 || |||||||||| ||| | ||||| || | | | || | ||| ||| Sbjct 4193 TCGCGGCGGTAGAGCGCGTTGCTTCCGACACAAATAGACGCTCCCCATCTGTTGCGGTTG 4252 Query 59417 ACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGTC 59476 ||||||| || |||||| ||||| ||||| || || || | |||||||||| ||| Sbjct 4253 ACCTGGACGACACGGTAAAACAGCTCCTGCGTGGCACCGGCGCCCTGCTCAACCCACGTC 4312 Query 59477 TGGTCG-GGGCGAACCTC-GAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534 |||||| || || ||| |||| |||||||| |||| |||| || ||||| ||||| Sbjct 4313 TGGTCGTCGGTGA--CTCGGAAGTACTGGGGGCTCTGGACAAGGGCCGTCTTGTCGTCA- 4369 Query 59535 GGGAAAAG-TAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCG 59593 | || | | | ||| | ||||||||| |||| |||||||| || ||||| || ||| Sbjct 4370 GCCAAGTGCTCGACCATCAGCTCCTTGAGGAAGTCGGGGCGCGGGCAAAAGTCGGCGTCG 4429 Query 59594 AAGATGGCAAAGAAG 59608 || ||||| |||||| Sbjct 4430 AAAATGGCGAAGAAG 4444 >seq3337 Length=46210 Score = 120 bits (132), Expect = 6e-22 Identities = 319/481 (66%), Gaps = 20/481 (4%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||| ||||| || | || || |||||||||||||| |||||| Sbjct 4079 TTCATGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG 4138 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048 | ||||| ||| |||||||||||| ||||||| | | | | | || ||| Sbjct 4139 CCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGT--TGGAAGACTTGTAGAC--CTTTTC 4194 Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 || || || || | | ||||| || |||||||| |||||||| ||||||||| Sbjct 4195 GTTGCCAAGCGCAACAAGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTT 4254 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 ||||||||||| | || | ||| || | || || | ||| |||| || | Sbjct 4255 GGAGTTCATGCCGAGCAGGGCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTT 4314 Query 10169 GACCGCTTCCTCGACGATG--CTCTTTA--CCACGTCAAGGGACAGCTTGTTCTCGAGCT 10224 ||| || || | | |||| ||| || | | | ||| | ||||| ||| | Sbjct 4315 GACAGCATCGACAATGATGTCCTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGT 4370 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 ||||||| ||| | || | ||| || |||||||| || ||||| ||||| Sbjct 4371 GGGAATACAAGAGACAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGT 4430 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344 |||| || |||||| |||||||| || || || |||||||| |||| ||| | Sbjct 4431 TGGAGAAGGTCAGACCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGG 4490 Query 10345 ACCCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA 10402 || | | |||||| ||||| ||| | |||| || ||||||| |||||||| Sbjct 4491 CACC--ACTAAAGAAGATGCCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGA 4548 Query 10403 G 10403 | Sbjct 4549 G 4549 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 || |||||| | || ||||| ||| | ||||||||| |||| |||||| |||||| Sbjct 4834 CAAGTTCTCATTGACGATGCCGTCGGAAGCGGCAAAGAAGGCGAGAATGTGCGAGATGAA 4893 Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741 || |||||| ||||| | || | |||||| || ||||| | | | | Sbjct 4894 GTACTTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCAAT 4953 Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 |||||| |||||||||||| ||| ||||||||||||||||||| Sbjct 4954 CTCCTCTGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTG 4998 >seq1679 Length=87701 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 ||| || |||||||||| |||||||||||| ||| | || || || |||||| || | Sbjct 81853 GGCGTAACGCCACTGGAGGTACTGGTTGGGCGTCTTCTCGAGATGCATCTCAACGTGCTC 81794 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 || ||| ||||| | || | || |||| |||||| |||||| || ||| Sbjct 81793 GAGAGCGTGCTGCTTGATATAACCTATACGCAGGTTGGGGTGCTTCTCTACCTTGCCGGT 81734 Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 || || ||||||| ||||| | ||||||||| || | |||||| ||||| ||||| Sbjct 81733 GGTGGGGATAACCTCGCCAGTGAGAATCTTGATGAGAGTGGACTTGCCGGCACCGTTGGG 81674 Query 225154 GCCAAT 225159 ||| || Sbjct 81673 GCCGAT 81668 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| ||||| |||||||||||||| || || | | | | | | || |||||| Sbjct 81379 GTCGAGGAAACCAGAGTCGTGGGAAACGATTAAGCTGGTAATATCGGGGTGGGTCTTGAG 81320 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || || |||||| || | |||| ||||||| |||||| |||||||| || || || Sbjct 81319 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAGGTGGTTAGTAGGTTCATCAAGCAG 81260 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||| | ||| || | |||| ||||| || | | || || ||||| ||||| || || Sbjct 81259 CAGAACGTCGGCGCCCTTGAGCATGGCACGAGCCAAAGCCAATTTCATCTTCCATCCACC 81200 Query 225625 GGACAGGGAGCCGA 225638 ||||| ||||||| Sbjct 81199 AGACAGAGAGCCGA 81186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921572194619760