Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1916 185 2e-41
seq3878 179 7e-40
seq2522 154 3e-32
seq426 141 2e-28
seq3337 120 6e-22
seq1679 96.9 6e-15
>seq1916
Length=1946
Score = 185 bits (204), Expect = 2e-41
Identities = 179/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||| | |||| ||| || |||||||| || |||||||| || |||||
Sbjct 1136 CCACCGCGCAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1195
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||||||||||||| || || | || |||||||| ||
Sbjct 1196 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1255
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 1256 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 1315
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || |||||||||||||||||||| |||||||| ||
Sbjct 1316 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 1365
>seq3878
Length=33396
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| ||||| | || | ||| || || || || || |||||||| || |||||
Sbjct 29360 CCTCCGCGCAGGCGAAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 29301
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || || | ||| |||||||| ||
Sbjct 29300 AGAGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGG 29241
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||||||| || |||||||||| |||||| ||
Sbjct 29240 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACC 29181
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 29180 TCAAGCGTGATCGTCTTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134
Score = 143 bits (158), Expect = 5e-29
Identities = 162/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || || || || |||||||| || |||||
Sbjct 29132 CCACCACGGAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 29073
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || | | ||| |||||||| ||
Sbjct 29072 AGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGG 29013
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || |||||
Sbjct 29012 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTACC 28953
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | |||||||| || || ||||| ||||||||||
Sbjct 28952 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 28916
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || ||||| || |||||||| ||||||
Sbjct 29588 CCGCCACGCAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTC 29529
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| || ||||| || || | || ||||| || ||
Sbjct 29528 AGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 29469
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| || || | ||||||| ||||| ||||| | || || ||
Sbjct 29468 ATACCCTCCTTGTCTTGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACC 29409
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || ||||| || | ||||||||| || || |||||
Sbjct 29408 TCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362
>seq2522
Length=51109
Score = 154 bits (170), Expect = 3e-32
Identities = 681/1053 (65%), Gaps = 74/1053 (7%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||||||| ||||||||||||| || || ||| ||| ||
Sbjct 14374 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAGGCG 14433
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 14434 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 14493
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| ||||||||||| |||||||| |||| |||||| ||||| ||||| || ||
Sbjct 14494 ACGAGCTCACCGGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCGATG 14553
Query 225161 ACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTTGCTGAAGATCTCAGG--- 225216
||| |||| ||||| | | | | | ||| || | || ||| ||||| ||
Sbjct 14554 ACGGCAATACGGGA-GCCGAGGGAGCACTGGAAGGAGATGTC-CTG--GATCTGGGGCTT 14609
Query 225217 GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGTC 225267
|| ||| |||| |||| || | ||||||| |||||| | |
Sbjct 14610 GCTAGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTGGC 14663
Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327
||||| | | |||||| ||||| |||||||||||||| ||| || | | |||
Sbjct 14664 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAGTC 14723
Query 225328 CTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384
| || |||||||| || ||||| || || ||| ||||| | |||||
Sbjct 14724 GCTGAGCTCGTAGTAGGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGGTT 14780
Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443
|| ||| | ||||||||| | || |||| || ||||| || | ||| ||
Sbjct 14781 ACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACAATGTGTTG-GCAGACGT 14836
Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTG 225502
||| |||||| ||||||||||||| || |||||||||| || | || |||
Sbjct 14837 TGTCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGACGTGCAAG-------GGGAGTTG 14889
Query 225503 ---AGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558
|||| || | |||||| ||||| | ||||||| |||||| ||||| |||||
Sbjct 14890 CAAAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTC 14948
Query 225559 CAGAAGCAGGATGTCAG---CATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTT 225615
|| |||||||| || | | |||| || | || || |||| |||||||| ||
Sbjct 14949 AAGGAGCAGGATATCGGGGGCCTCAAAGACG---GCACGGCACAGAGCGAGCTTCATCTT 15005
Query 225616 CCAGCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC 225675
||| || ||||| |||| | ||| | | | | | | ||| |||||| ||||
Sbjct 15006 CCAACCACCGGAAAGGGCGGAGATCTCACCCTTGATCATGCCGTCGGTGAAGCCGAACTC 15065
Query 225676 CAGGAGCGT---CTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGT--TGGGG--- 225727
||| | || || | || ||||| || ||| | || ||| ||| |
Sbjct 15066 GTTCAGCTTGGCCTCGACG-TCAGCCTGGGAGGTCT-CGA-CACCAGCGTCCTGGAGCTT 15122
Query 225728 --TC--GGACGAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTG 225783
|| || | || | || | |||||| || | | ||| | ||||| ||||||
Sbjct 15123 CTTCATGGTCCAGTCG--ATGGT----GGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTG 15176
Query 225784 GTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGC 225843
|| ||| | || ||| || || || | |||||| ||||| | ||| | ||
Sbjct 15177 CTCGACGAAGACGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTT 15236
Query 225844 AATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATT 225903
|| || || | ||||| |||||| | |||||||| ||| || ||||| | |
Sbjct 15237 GATGGCGCGCATGAGGGTGGACTTGCCGGAACCGTTGGGGCCGCAAAGACCGTAGCGCTG 15296
Query 225904 CCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGA 225963
|| ||||||| ||| | || ||| || || |||||| |||| |||||||||||
Sbjct 15297 GCCACGCTTGAGACGAAGGTGAGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCAAGGGA 15356
Query 225964 GAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
||| ||| | ||| |||||||||||||||||
Sbjct 15357 GAAGGTGCAGTTGCAAAGGTCCTCACCCTCCTC 15389
>seq426
Length=9009
Score = 141 bits (156), Expect = 2e-28
Identities = 224/315 (71%), Gaps = 6/315 (2%)
Strand=Plus/Plus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| ||||||||||| || |||||||||||| || || ||||||| || || |
Sbjct 4133 CCAGTGTGGACGTCTTCCGAGAAGCCAATCTCGGCGGTTCCGCCGACCTCGACGAGGGAT 4192
Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAGAA 59416
|| |||||||||| ||| | ||||| || | | | || | ||| |||
Sbjct 4193 TCGCGGCGGTAGAGCGCGTTGCTTCCGACACAAATAGACGCTCCCCATCTGTTGCGGTTG 4252
Query 59417 ACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGTC 59476
||||||| || |||||| ||||| ||||| || || || | |||||||||| |||
Sbjct 4253 ACCTGGACGACACGGTAAAACAGCTCCTGCGTGGCACCGGCGCCCTGCTCAACCCACGTC 4312
Query 59477 TGGTCG-GGGCGAACCTC-GAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534
|||||| || || ||| |||| |||||||| |||| |||| || ||||| |||||
Sbjct 4313 TGGTCGTCGGTGA--CTCGGAAGTACTGGGGGCTCTGGACAAGGGCCGTCTTGTCGTCA- 4369
Query 59535 GGGAAAAG-TAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCG 59593
| || | | | ||| | ||||||||| |||| |||||||| || ||||| || |||
Sbjct 4370 GCCAAGTGCTCGACCATCAGCTCCTTGAGGAAGTCGGGGCGCGGGCAAAAGTCGGCGTCG 4429
Query 59594 AAGATGGCAAAGAAG 59608
|| ||||| ||||||
Sbjct 4430 AAAATGGCGAAGAAG 4444
>seq3337
Length=46210
Score = 120 bits (132), Expect = 6e-22
Identities = 319/481 (66%), Gaps = 20/481 (4%)
Strand=Plus/Plus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
|||||||| || ||||| ||||| || | || || |||||||||||||| ||||||
Sbjct 4079 TTCATGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG 4138
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048
| ||||| ||| |||||||||||| ||||||| | | | | | || |||
Sbjct 4139 CCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGT--TGGAAGACTTGTAGAC--CTTTTC 4194
Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108
|| || || || | | ||||| || |||||||| |||||||| |||||||||
Sbjct 4195 GTTGCCAAGCGCAACAAGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTT 4254
Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168
||||||||||| | || | ||| || | || || | ||| |||| || |
Sbjct 4255 GGAGTTCATGCCGAGCAGGGCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTT 4314
Query 10169 GACCGCTTCCTCGACGATG--CTCTTTA--CCACGTCAAGGGACAGCTTGTTCTCGAGCT 10224
||| || || | | |||| ||| || | | | ||| | ||||| ||| |
Sbjct 4315 GACAGCATCGACAATGATGTCCTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGT 4370
Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284
||||||| ||| | || | ||| || |||||||| || ||||| |||||
Sbjct 4371 GGGAATACAAGAGACAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGT 4430
Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344
|||| || |||||| |||||||| || || || |||||||| |||| ||| |
Sbjct 4431 TGGAGAAGGTCAGACCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGG 4490
Query 10345 ACCCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA 10402
|| | | |||||| ||||| ||| | |||| || ||||||| ||||||||
Sbjct 4491 CACC--ACTAAAGAAGATGCCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGA 4548
Query 10403 G 10403
|
Sbjct 4549 G 4549
Score = 91.5 bits (100), Expect = 3e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681
|| |||||| | || ||||| ||| | ||||||||| |||| |||||| ||||||
Sbjct 4834 CAAGTTCTCATTGACGATGCCGTCGGAAGCGGCAAAGAAGGCGAGAATGTGCGAGATGAA 4893
Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741
|| |||||| ||||| | || | |||||| || ||||| | | | |
Sbjct 4894 GTACTTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCAAT 4953
Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786
|||||| |||||||||||| ||| |||||||||||||||||||
Sbjct 4954 CTCCTCTGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTG 4998
>seq1679
Length=87701
Score = 96.9 bits (106), Expect = 6e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033
||| || |||||||||| |||||||||||| ||| | || || || |||||| || |
Sbjct 81853 GGCGTAACGCCACTGGAGGTACTGGTTGGGCGTCTTCTCGAGATGCATCTCAACGTGCTC 81794
Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093
|| ||| ||||| | || | || |||| |||||| |||||| || |||
Sbjct 81793 GAGAGCGTGCTGCTTGATATAACCTATACGCAGGTTGGGGTGCTTCTCTACCTTGCCGGT 81734
Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153
|| || ||||||| ||||| | ||||||||| || | |||||| ||||| |||||
Sbjct 81733 GGTGGGGATAACCTCGCCAGTGAGAATCTTGATGAGAGTGGACTTGCCGGCACCGTTGGG 81674
Query 225154 GCCAAT 225159
||| ||
Sbjct 81673 GCCGAT 81668
Score = 93.3 bits (102), Expect = 8e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| ||||| |||||||||||||| || || | | | | | | || ||||||
Sbjct 81379 GTCGAGGAAACCAGAGTCGTGGGAAACGATTAAGCTGGTAATATCGGGGTGGGTCTTGAG 81320
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| || |||||| || | |||| ||||||| |||||| |||||||| || || ||
Sbjct 81319 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAGGTGGTTAGTAGGTTCATCAAGCAG 81260
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
||| | ||| || | |||| ||||| || | | || || ||||| ||||| || ||
Sbjct 81259 CAGAACGTCGGCGCCCTTGAGCATGGCACGAGCCAAAGCCAATTTCATCTTCCATCCACC 81200
Query 225625 GGACAGGGAGCCGA 225638
||||| |||||||
Sbjct 81199 AGACAGAGAGCCGA 81186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921572194619760
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