Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq245 396 5e-105 seq3337 266 6e-66 >seq245 Length=98725 Score = 396 bits (438), Expect = 5e-105 Identities = 924/1379 (67%), Gaps = 61/1379 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || || || ||||| || | || || || |||||||| | |||| | || || Sbjct 90701 GTTGACGACTTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTGGAGGTGTAAGG 90642 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 |||| || ||| |||| |||| ||||| | ||||| |||||||||||||||| || Sbjct 90641 TTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGAC 90582 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTC 244266 |||||| ||| | || |||||| || ||| ||| ||| ||| | || Sbjct 90581 GAGCAGAGAGTTGCGGACACCGTGCTGCTTGAT-------CTG--CTCCTTCAGAGAATC 90531 Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 ||| | || |||| ||| | |||||| ||||||||| |||| || | |||| Sbjct 90530 CCA---GTCCCAGAGATCCGAGGGTTTGACATTCCACATGTCGTACTGGAGGATGCCCTG 90474 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA-CAGC 244385 || ||| ||||| || ||| | ||||| || || || ||||| || | | | Sbjct 90473 AGAAACAGGGGAACCCTCATACGTCTGATAGGGGCCCTCCTCCTTGGCCAACTGAACCGA 90414 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 | || ||||| |||| |||||| |||||||||||| ||||||| | ||| || || | Sbjct 90413 CATGGTA-AGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGGTCACGAGCTT 90355 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | | | |||||| |||| | || |||| | ||||| || ||||| || |||| Sbjct 90354 CGGGGGACTCGAAGGGCATGCGGAGGGCCAAGAAGGCATCGGCAAGACCCTGAACACCGA 90295 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 || ||||| | ||| ||| ||||| | || | || | || || ||||| |||| Sbjct 90294 GACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGG-ACCGGGTAGTGGTTG 90236 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 | ||||| | ||||||||||||| || | || ||| ||| ||| ||| Sbjct 90235 ACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTCTGG 90176 Query 244625 AAGTCGTA------CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGG 244678 |||||||| ||||| | | || ||| |||| | | ||| Sbjct 90175 AAGTCGTAAACACCCTCGTTG---TAGTCAACGAAGGTGGGCAGCGCAA----------- 90130 Query 244679 GCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 |||| |||||||||||| || || ||||| || | | ||||| | ||||| Sbjct 90129 GCGA----GGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCA 90074 Query 244739 GTGCAGAGGTTACTGCACTT---GATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 ||||| ||||| | | || |||||| ||||||| || || ||| |||| |||| Sbjct 90073 GTGCATAGGTT---GGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG 90017 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTG 244855 || |||||||||||||| ||||| || |||||| || || |||||| | Sbjct 90016 GCAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCA 89957 Query 244856 TTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGT 244914 | |||||| | ||||| | ||| ||||| | |||||| ||||| ||||| Sbjct 89956 TACCAGAGCTTTTGGGCCTTTAGGGTCTTGCGACCTTTGCCCATCTGC-TCGTACTTCTC 89898 Query 244915 GTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCA 244974 ||||||||||||||| || ||| || ||| | || || |||||| ||||| Sbjct 89897 GTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCA 89838 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034 ||||||| |||| |||||| | || || |||| ||||||||| |||||||||||||| Sbjct 89837 CATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAG 89778 Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094 ||| | || ||||| | | | ||| ||| ||| |||||| | ||| ||||| Sbjct 89777 GGCGAGAAATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAA 89718 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 |||||||| || || ||||||| ||||| | ||||| || | || ||||| ||||| Sbjct 89717 GAAGTCAAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTT 89658 Query 245155 GTTGCCTCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTA 245213 ||| || |||||||| || | | || | |||||||| || || | || || | Sbjct 89657 GTTTCCGCCCTGGTCGACGTAGCGGGC-AGTGTTGTTGAAGACACGGAGCATGGGAACGA 89599 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA 245273 |||||||||| |||||||||||| ||||| | ||| | | | || ||| | Sbjct 89598 CGCCGTTAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGC---GCGGATGC-GG 89543 Query 245274 TGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTG 245329 ||||| | || | || || || ||||||||| | || ||| |||||| |||| Sbjct 89542 TGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTG 89483 Query 245330 TCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGG 245389 || || ||||| || |||| |||||| | || || || || ||||||||||| Sbjct 89482 TCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGC 89423 Query 245390 GGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 | || |||| | | | |||||| || ||||| ||||||||| ||| | |||||| Sbjct 89422 GCCTGGGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTCGA 89364 >seq3337 Length=46210 Score = 266 bits (294), Expect = 6e-66 Identities = 366/503 (73%), Gaps = 9/503 (2%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAG 42703 |||||||| |||||||| ||||| ||||| || | || | | | |||| | || | Sbjct 4593 AAGAAGGCCGACTGGGCCCTCAAGTGGATT-AGCGATGAGAAGTCCTCCTTCGCCCAGCG 4535 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 ||||| |||||| | |||||||||||||||||||| || |||||||| |||||||| Sbjct 4534 CCTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTT 4475 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| || ||| || ||||| || || |||||||| ||||| |||||| Sbjct 4474 CTGGCTCAAGAAGCGTGGTCTC-ATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTC 4416 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| ||||| | ||||| ||||| ||| ||| || |||||||| | || Sbjct 4415 GTGACGAGGGTCTGCACACCGACTTCGCCTGTCTCTTGTATTC---CCACCTCAAGAACC 4359 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| ||| || || || |||||| || || || |||| ||| |||||| Sbjct 4358 GCCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAGCAGGAGT 4299 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 |||| ||| || | || || ||||| ||||||||||| | |||| ||| ||| Sbjct 4298 TCCTGACGGAGGCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGT 4239 Query 43003 ACATCCAGTACGTCGCCGACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 |||| ||| ||| ||||||| ||||| ||| | | | || | ||||||| Sbjct 4238 ACATTGAGTTCGTTGCCGACCGTCTCCTTGTTGC-GCTTGGCAACGAAAAGGTCTACAAG 4180 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 | | |||||||||||| |||||||||||||| ||| |||||||||||||| ||| Sbjct 4179 TCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTC 4120 Query 43122 GAGAAGCGCGTCGCCGACTACCA 43144 |||||||| || ||||||||||| Sbjct 4119 GAGAAGCGTGTTGCCGACTACCA 4097 Score = 120 bits (132), Expect = 6e-22 Identities = 232/336 (69%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||| |||||||||||| || Sbjct 5004 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGATTGACTTG 4945 Query 42360 GCCAAGGACACGGCCGGCTGGGA-GTCACTGTC--TGAGAACGAAAAGTTTTTCCTCAAA 42416 ||||||| | || |||| | || || ||| | || |||| ||| || Sbjct 4944 TCCAAGGATCTGCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 4885 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||| ||||| || |||||||| |||||||||||| ||| | | Sbjct 4884 CACATTCTCGCCTTCTTTGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 4825 Query 42477 TTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| | ||| | || || ||||| ||||| ||||||||||| || Sbjct 4824 TTCAGCGGCGAGGTTCAAGTGC-CCGAAGCCCGCTGTTTCTATGGCTTCCAGATTATGAT 4766 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | || || ||| ||| | ||||||| |||| |||||| ||| || Sbjct 4765 GGAGAACATCCATTCCGAGACCTACTC---GCTGCTCATCGACACCTACATCAAGGAGCC 4709 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | |||| | || ||||| ||||| || || Sbjct 4708 GGCCCAGCGCACGTACCTTTTCAACGCCATCGACAC 4673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944287757122080