Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3878 82.4 6e-11 >seq3878 Length=33396 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || || || || ||||||||| ||||||||||| || Sbjct 29589 ACCGCCACGCAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATC-GC 29531 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || |||| |||| |||||| || || || |||||||||||||| || | Sbjct 29530 TCAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGG 29471 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| ||||| ||||| ||| | | | | | |||| ||| || Sbjct 29470 GGATACCCTCCTTGTCTTGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAA 29411 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || || |||||||| | || || |||||||||||||| Sbjct 29410 CCTCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397041310775116