Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1916 122 2e-22
seq3878 113 1e-19
seq3441 102 2e-16
seq3337 87.8 4e-12
>seq1916
Length=1946
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | ||| || || || | ||| || || ||||| || |||||||
Sbjct 1136 CCACCGCGCAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1195
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || ||||||||||| ||||| || |||
Sbjct 1196 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1255
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| ||| || ||
Sbjct 1256 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 1315
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || ||||| ||||| || || || ||||||||||| |||||||| ||
Sbjct 1316 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 1365
>seq3878
Length=33396
Score = 113 bits (124), Expect = 1e-19
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| ||||| || | ||| ||||| || | || ||| || ||||| || |||||||
Sbjct 29360 CCTCCGCGCAGGCGAAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 29301
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || |||||||| || || || |||
Sbjct 29300 AGAGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGG 29241
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| || ||||| || || | || ||||| ||
Sbjct 29240 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACC 29181
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| |||||||||||||| || || || ||||||||||| ||||||||
Sbjct 29180 TCAAGCGTGATCGTCTTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134
Score = 89.7 bits (98), Expect = 1e-12
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | || | || ||| || ||||| || |||||||
Sbjct 29132 CCACCACGGAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 29073
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || ||||||| || || || |||
Sbjct 29072 AGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGG 29013
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| || |||||
Sbjct 29012 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTACC 28953
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
||||| ||||| ||||| || || |||||||||||||
Sbjct 28952 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 28916
>seq3441
Length=28323
Score = 102 bits (112), Expect = 2e-16
Identities = 200/288 (69%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 325963 TACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACA 326022
|||||| || |||||||||| | ||||| | || |||| | |||| ||| |
Sbjct 19006 TACGATGGGAGTGATGAACTCCCGGAAGAAGTCGGGGATTTGCAAAAGAGATGGGTACTG 19065
Query 326023 GCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGT 326082
| || || ||||| || | ||||| ||||||| ||||| |||| ||||
Sbjct 19066 GACTTGCAAGAAGTTGATAAGAAGACCCTTGATGTGAGAACCGTCGTGATCCTGATCGGC 19125
Query 326083 CATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTT-T 326141
||||||||||| |||||| || || || ||| ||| |||| | | | || |
Sbjct 19126 CATGATCATCAGATGACCATAGCGTAGACTCTTCGTATCTGTGTAGG-TCTGCTTGTGCT 19184
Query 326142 GAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCAC 326199
|| ||||| | || |||| | ||| |||||| | |||||||||||| || | | |
Sbjct 19185 TCAGACCGAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTCGTGAT-CTGGTCGAT 19242
Query 326200 GGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCC 326247
|||||| || ||||||||||| | ||| |||||||| ||||| |||||
Sbjct 19243 GGATGCGTCACGGACGTTCAACATTTTACCACGAAGGGGGAAGACTCC 19290
>seq3337
Length=46210
Score = 87.8 bits (96), Expect = 4e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209
|| |||| ||||| || | || ||||| || || || || ||||| || || ||| ||
Sbjct 4271 TGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTCC 4212
Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269
| || || || | || || || ||||| || || ||||||| ||| |||||
Sbjct 4211 TTGTTGCGCTTGGCAACGAAAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGA 4152
Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329
|| || || | || ||||| ||||||||||| |||||||| |||||| |||
Sbjct 4151 ACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAAAAGG 4092
Query 269330 CTGGTGTAATGAA 269342
||||||| |||||
Sbjct 4091 CTGGTGTCATGAA 4079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179588531784724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |