Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3337 98.7 2e-15 seq3441 96.9 8e-15 >seq3337 Length=46210 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| |||| ||| || | ||||||||||| | || ||| |||||||| || Sbjct 4290 GAGGCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAG 4231 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| |||||||| | | | |||||||| | || || || ||||| || ||| Sbjct 4230 TTCGTTGCCGACCGTCTCCTTGTTGCGCTTGGCAACGAAAAGGTCTACAAGTCTTCCAAC 4171 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 ||||| | ||| |||||| ||| || || || || || ||||||||||| |||||| Sbjct 4170 CCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGT 4111 Query 243724 GTCAGTGATTATCAACGCCCTGGTGTGATGAA 243755 || || || ||| ||||||| ||||| Sbjct 4110 GTTGCCGACTACCAAAAGGCTGGTGTCATGAA 4079 >seq3441 Length=28323 Score = 96.9 bits (106), Expect = 8e-15 Identities = 199/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 298084 TACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACA 298143 |||||| || |||||||||| | ||||| | || |||| | |||| ||| | Sbjct 19006 TACGATGGGAGTGATGAACTCCCGGAAGAAGTCGGGGATTTGCAAAAGAGATGGGTACTG 19065 Query 298144 GCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGT 298203 | || || ||||| || | ||||| ||||||| ||||| |||| |||| Sbjct 19066 GACTTGCAAGAAGTTGATAAGAAGACCCTTGATGTGAGAACCGTCGTGATCCTGATCGGC 19125 Query 298204 CATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTT-T 298262 ||||||||||| |||||| || || || ||| ||| |||| | | | || | Sbjct 19126 CATGATCATCAGATGACCATAGCGTAGACTCTTCGTATCTGTGTAGG-TCTGCTTGTGCT 19184 Query 298263 GAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCAC 298320 || ||||| | || |||| | ||| |||||| | |||||||||||| || | | | Sbjct 19185 TCAGACCGAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTCGTGAT-CTGGTCGAT 19242 Query 298321 GGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCC 298368 |||||| || ||||| ||||| | ||| |||||||| ||||| ||||| Sbjct 19243 GGATGCGTCACGGACGTTCAACATTTTACCACGAAGGGGGAAGACTCC 19290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102818418627300