Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq245 295 7e-75 >seq245 Length=98725 Score = 295 bits (326), Expect = 7e-75 Identities = 1075/1668 (64%), Gaps = 30/1668 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || |||||| || |||||||| ||| | || ||| Sbjct 89208 AACTACCAATACTTCGGCTTCAAGACCTTGGAGAGATCTTACCTCCTGAAGCTTGACGGC 89267 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| |||| || || || | ||||| || || |||| || ||| || Sbjct 89268 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTTGCTGTCGGAATCTGGGGCGAC 89327 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | ||| | | | | || ||| | |||| | ||| ||| Sbjct 89328 AACGTTGAGCGCGTTATCGAGACCTACAACCTGATGTCGAGCAAGTTCTTCACCCACGCC 89387 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || || || |||||||| || ||||| | | ||| |||| || |||||||| || Sbjct 89388 TCTCCCACACTCTTCAACGCCGGTACCCCCCAGGCGCAGCTGTCCTCTTGTTTCCT--TG 89445 Query 93955 ACGAAC--AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 ||| |||| ||||| ||| || || | ||||| ||||||| |||||| | | Sbjct 89446 TCGATATGAAGGAGGACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGTGCTATGA 89505 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 |||| || || || || || || ||| |||||| | | || || | || || | Sbjct 89506 TCTCCAAGATGGCTGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTT 89565 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| || ||||| |||||||| |||||| |||| || |||||||| |||||||||| Sbjct 89566 ACATTGCTGGCACCAACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCAACA 89625 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || |||||||| |||||||| || | | | ||| |||| || |||| | Sbjct 89626 ACACTGCCCGCTACGTCGACCAGGGCGGAAACAAGCGCCCCGGTGCTTTTGCCATCTACC 89685 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||||| || || | ||| | || ||||| |||||||| || || | Sbjct 89686 TCGAGCCTTGGCACGCTGATGTATTTGACTTCTTGGATCTGCGCAAGAACCATGGGAAGG 89745 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | || | ||||| || ||| |||||| | || || || || ||||| Sbjct 89746 AGGAGGTCCGCGCTCGTGACCTATTTCTCGCCCTCTGGATCCCCGATCTCTTCATGAAGA 89805 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||||| ||| || ||||| ||| | || ||||| || || || || || ||| Sbjct 89806 GAGTGGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGTCTCGCCG 89865 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 || | || | || || | | |||| | ||||| | |||||| | Sbjct 89866 ACTGCTACGGCGAGGAATTCGAGGCCCTGTACGAGAAGTACGAGCAGATGGGCAAAGGTC 89925 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| | | || ||||| ||| || ||| | || | || ||||| | Sbjct 89926 GCAAGACCCTAAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACTG 89985 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 ||| |||| || | | |||||| ||| |||| |||| ||||||| || |||| | Sbjct 89986 GTAACCCCTTTATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGG 90045 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | ||| | ||| || || ||||| ||||| | ||||| |||| || ||| Sbjct 90046 GTACCATCCGTAACTCCAACCTATGCACTGAGATCATTGAGTACTGCGCTCCTGATGAGG 90105 Query 94613 TTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGT 94672 | || ||||| ||||||| ||| | ||| |||| ||||| || ||||| Sbjct 90106 TCGCAGTGTGCAACCTGGCCTCGCTTGCGCTGCCCACCTTCGT------TGACTACA--A 90157 Query 94673 CTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT---GA 94729 | | | | | ||| | || ||||| | || | ||| | ||| | | Sbjct 90158 CGA-GGGTGTTTACGACTTCCAGAAGCTTCACGAGGTCAC--CCAGG-TCGTCGTTCGCA 90213 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 |||| ||||| | ||||| ||| |||||| |||| |||||| ||| ||| Sbjct 90214 ACCTCAACAGAATCATCGATGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACA 90273 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || || || ||||| || |||| || |||||| | || || || | || | | Sbjct 90274 TGCGCCACCGCCCCATTGGTCTCGGTGTTCAGGGTCTTGCCGATGCCTTCTTGGCCCTCC 90333 Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 | |||||| ||| || ||| || | | || ||| || ||||| | || | Sbjct 90334 GCATGCCCTTCGAGTCCCCCGAAGCTCGTGACCTCAACAAGAAGATCTTCGAGACAATCT 90393 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC-ACGAA 94968 | ||| ||| | | || || || ||||||| ||| || ||||| | | | Sbjct 90394 ACCACGCTGCCCTTACCATGTCGGTTCAGTTGGCCA---AGGA-GGAGGGCCCCTATCAG 90449 Query 94969 TCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAG 95028 ||| || || || | |||||||| | |||| |||| | ||| ||| || Sbjct 90450 ACGTATGAGGGTTCCCCTGTTTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAA 90509 Query 95029 CCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGA 95086 ||||||| ||| | |||||||| |||| | | || || | | | |||||||| Sbjct 90510 CCCTCGGATCTCTGGGACTGGGATTCTCTGAAGGAGCAGA--TCAAGCAGCACGGTGTCC 90567 Query 95087 AAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACA 95146 ||| | ||||| || || |||||||| || ||| ||| | |||||| | || |||| Sbjct 90568 GCAACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGTAACA 90627 Query 95147 ACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAAT 95206 |||||| |||||||| | |||||||||| | ||| | | || || || || || || | Sbjct 90628 ACGAGTGCTTCGAACCTTACACCTCCAACATTTACCAGCGTCGTGTCCTTGCTGGCGAGT 90687 Query 95207 TCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGAC 95265 ||| ||| ||||| ||| | |||||| | || | |||| ||||| |||| Sbjct 90688 TCCAAGTCGTCAACCCTTGGCTCTTGAAGGACCTCGTCGAC-ATGGGCTTGTGGTCTGAC 90746 Query 95266 AAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCG 95325 | ||||||| | | || ||||| || | ||||||||||| | || || Sbjct 90747 GCTATGAAGAACCGCATCATTGCCGAGAACGGTTCTATTCAGAACATCCCCAACATTCCT 90806 Query 95326 GAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || |||||||||| |||||||| || ||||| ||| | |||||| Sbjct 90807 ACCGAGGTCAAGGCGCTGTACAAGACTGTTTGGGAAATCTCCCAGCGC 90854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494696249953680