Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq245 214 2e-50 seq3337 131 2e-25 >seq245 Length=98725 Score = 214 bits (236), Expect = 2e-50 Identities = 1143/1806 (63%), Gaps = 55/1806 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| |||||||| || || |||||||| || | ||||| || Sbjct 91006 CGCAGGTAGTACATGCCCGTCTTCAGTCCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTG 90947 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | || || || |||| || ||| | || || || ||||||||| Sbjct 90946 ATCTTGCCCATAGTCGGGTCTTTCATGTGGATGTTGAGCGACTGCGACTGGTCGATGAAG 90887 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 || || || || ||||| | |||| | | || | |||||||| ||||| Sbjct 90886 GCGCCACGGTCGGCAGCCATTTG---CACAACGGTGCGCTGGGAGATTTCCCAAACAGTC 90830 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || ||| | || || || | ||| || || ||||| ||| | Sbjct 90829 TTGTACAGCGCCTTGACCTCGGTAGGAATGTTGGGGATGTTCTGAATAGA---ACCGTTC 90773 Query 115795 TTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 | | | |||| | | ||||||| | | ||||| | || || | ||| |||| | Sbjct 90772 TCGGCAATGATGCGGTTCTTCATAGCGTCAGACCACAAGCCCATGTCGACGAGGTCCTTC 90713 Query 115852 ACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTG 115911 | ||| ||||| || ||||| || || ||| || | | | || |||||| Sbjct 90712 AAGAGCCAAGGGTTGACGACTTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTG 90653 Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971 | ||||| || || |||||||| |||||||||||||| || | ||| ||| || ||| Sbjct 90652 GAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGC 90593 Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCG 116031 ||||| || | ||| || |||||||| ||| | | | || | ||||| || | Sbjct 90592 ATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAA 90533 Query 116032 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091 |||||||| || | | | | | |||||| || |||||||||| || || Sbjct 90532 TCCCAGTCCCAGAGATCCGAGGGTTTGACATTCCACATGTCGTACTGGAGGATGCCCTGA 90473 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 116151 || | || || |||||| | |||| ||| |||||||| ||| ||||| | || | Sbjct 90472 GAAACAGGGGAACCCTCATACGTCTGATAGGGGCCCTCCTCCTTGGCCAA--CTGAACCG 90415 Query 116152 GCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 116209 | | | ||||| ||||| || |||||||| || || || | | || | Sbjct 90414 ACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGGTCACGAGCTT 90355 Query 116210 CGTCGGAATCAAACGCGA----GACGGCACAAAATAAATACATCCGCGAGACCTTGGACA 116265 || ||| || || | | || ||| ||| || |||| || ||||| || ||| Sbjct 90354 CGGGGGACTCGAAGGGCATGCGGAGGGC-CAA---GAAGGCATCGGCAAGACCCTGAACA 90299 Query 116266 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAA 116325 ||||| ||||| ||||| || | ||| || || ||||| || || || || Sbjct 90298 CCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGG 90239 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 || |||||| | || || || || ||| |||| |||| || |||||||| Sbjct 90238 TTGACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTC 90179 Query 116386 TCGTAATC-AAAACTGCGAGTCTCTTCATTG---ACATACTTAGGAAGGGCGATTGACGC 116441 | | | || |||| | ||| | | | || | | || || || | || || Sbjct 90178 TGGAAGTCGTAAAC----ACCCTCGTTGTAGTCAACGAAGGTGGGCAGCGCAAGCGAGGC 90123 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 ||| || ||||| | | |||||| | | |||||| || || || || || | || Sbjct 90122 CAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCAGTGCATAGGTT 90063 Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 116561 || | ||||| |||| |||||| || || ||| ||| ||||||||||| Sbjct 90062 GGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTA 90003 Query 116562 GAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGC 116621 ||||||| | || | || ||||| ||||| | || ||| || || | ||| | || Sbjct 90002 GAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGA-----GC 89948 Query 116622 GGCTGGCACAGTGGCGT-TGGC-----TCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 ||| | | | || | || | |||| | || ||||||||| ||| ||||| Sbjct 89947 TTTTGGGCCTTTAGGGTCTTGCGACCTTTGCCCAT-CTGCTCGTACTTCTCGTACAGGGC 89889 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| || || || || ||| || | ||| || || || | || || | ||||| Sbjct 89888 CTCGAATTCCTC-GCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAGAG 89830 Query 116735 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG- 116793 ||| | || || ||| || | |||||||||||| || ||||||||||| | |||| Sbjct 89829 TCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAG-GGCGAGA 89771 Query 116794 AAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 || || || ||| ||| | || || | ||| || || |||| ||||| ||||| Sbjct 89770 AATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTCA 89711 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCA 116910 | | ||| |||||||| || || ||||| | || | | || ||| || Sbjct 89710 AATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCG 89651 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 |||||| || || | || || ||| || || || ||||| |||| || || | | Sbjct 89650 CCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTTA 89591 Query 116971 GATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATA 117030 || ||| || || || ||| ||| | | || | || ||||| || | | Sbjct 89590 GAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGA 89531 Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 ||||| || || ||| ||| ||||| || || | |||| || ||||||| || Sbjct 89530 CCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGATACCC 89471 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 ||||| ||||| |||| | ||| ||||| || |||| || | | || ||| Sbjct 89470 TCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGGGGTA 89411 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGT 117208 || ||||||||||| || || | |||||| ||| | | |||| |||||| | || Sbjct 89410 CCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTCGACATCAGGTTGT 89353 Query 117209 AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACA 117268 ||||||| | || || || || || || |||| | || ||||| | || Sbjct 89352 AGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCGACAGCAACACGCATGATCA 89293 Query 117269 TGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGG 117328 ||| |||||| | || | | || || ||| || |||||||| ||||||||| Sbjct 89292 TGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTAAGATCTCTCCAAGG 89233 Query 117329 TCTTGA 117334 |||||| Sbjct 89232 TCTTGA 89227 >seq3337 Length=46210 Score = 131 bits (144), Expect = 2e-25 Identities = 343/520 (66%), Gaps = 14/520 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 4099 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCAT 4158 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || || ||||| || || | | || |||| | |||||||| Sbjct 4159 GAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAAGCGCAACAAGGAGACG 4218 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 || | ||| |||||||||||| |||| | |||||||| |||| ||| || Sbjct 4219 GTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGGCGCA 4278 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || || || ||| | |||| ||| |||||| | ||||| || | |||| | | Sbjct 4279 AGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATGATGTCCTC 4338 Query 127471 AATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAG-CAAACT 127526 ||| | | | || | | ||| | | | ||||| |||| | || | Sbjct 4339 GATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAATACAAGAG----ACAGGCGAAGT 4394 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| |||||||||||||| |||||||| || || |||||| |||||| ||||||| Sbjct 4395 CGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGCATGA 4454 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 |||| |||||||| | |||||| || | || | ||| |||||||| ||||| | Sbjct 4455 GACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCCCTCGA 4514 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAACCACT 127703 | || || |||| || |||| ||| ||||| |||||| ||| || ||||| Sbjct 4515 CGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGA---GGACTTCTCATCGCTAATCCACT 4571 Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 | | ||||| | ||||| || || || ||||| || Sbjct 4572 TGAGGGCCCAGTCGGCCTTCTTGCGAATGCAAGGGACTGT 4611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613473779195280