Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq245 167 4e-36 >seq245 Length=98725 Score = 167 bits (184), Expect = 4e-36 Identities = 421/620 (68%), Gaps = 19/620 (3%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACA 203894 ||||| || || ||||||||||| |||| | | |||| ||||| | | ||| ||||||| Sbjct 91051 TCTTGGTCGACAGTGAACTGAATAGGCGCTG-CAGCAG-CCTGCGTGCGCAGGTAGTACA 90994 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGT 203954 |||| ||||| || || || ||| || | ||||||| | | |||| || Sbjct 90993 TGCCCGTCTTCAGTCCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAG 90934 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCT 204013 | ||||| |||||| ||||| || ||||| ||||||||| |||||||| || || Sbjct 90933 TCGGGTCTTTCATGTGGATGTTGAGCGACTGCGACTGGTCGATG-AAGGCGCCACGGTCG 90875 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCT 204072 || ||||| | | || ||| ||| || || ||||| || |||||| ||| || || | Sbjct 90874 GCAGCCATTTGCACAACGGTGCGCTGGGAGATTTCCCAAACAGTCTTGTACAGCGCCT-T 90816 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | ||| | | | | || ||| || || ||||| ||||| || | | Sbjct 90815 GACCTCGGTAGGAATGT-TGGGGATGTTCTGAATAGAACCGTTCTCGGCAATGATGCGGT 90757 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | | || ||||| ||||| || || ||| || || ||||||| Sbjct 90756 TCTTCATAGCGTCAGACCACAAGCCCATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGA 90697 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 || || || || || | || || | || | | | |||| |||| | ||||||| Sbjct 90696 CGACTTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTGGAGGTGTAAGGTTCGA 90637 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||||| || || ||||||| ||||||||| || |||||||| || | ||||| Sbjct 90636 AGCACTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCA 90577 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTC---GTGC 204367 | |||||||| ||||||| | | || |||| ||||||||| |||||| | | Sbjct 90576 GAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAGAGAATCCCAGTCCCAGAG- 90519 Query 204368 ATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG 204427 ||| | |||||| || |||||||||| |||| | |||||| ||| || ||| Sbjct 90518 ATCCGA--GGGTTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 90461 Query 204428 CCCTTGTACGTCGGATAAGG 204447 |||| |||||| |||| || Sbjct 90460 CCCTCATACGTCTGATAGGG 90441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795111883920480