Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3337 136 4e-27
seq1916 122 9e-23
seq3878 105 7e-18
seq3617 96.9 3e-15
>seq3337
Length=46210
Score = 136 bits (150), Expect = 4e-27
Identities = 196/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||||||||| ||| || | || || || | ||||||||| || || ||
Sbjct 4720 GTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAATGGATGTTCTCCATCATAATCTGGAA 4779
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||| || || || || || ||| ||| || || || ||| |||||||||| ||
Sbjct 4780 GCCATAGAAACAGCGGGCTTCGGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAGTT 4839
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|| ||||||||||||||| ||||| || ||||| || | |||| |||||| |
Sbjct 4840 CTCATTGACGATGCCGTCGGAAGCGGCAAAGAAGGCGAGAATGTGCGAGATGAAGTACTT 4899
Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | |||| || | | ||||||| || |||||||||| ||| | ||||||
Sbjct 4900 CTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCAATCTCCTC 4959
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || || |||||||| || ||||||||
Sbjct 4960 TGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 4995
Score = 122 bits (134), Expect = 9e-23
Identities = 350/525 (67%), Gaps = 30/525 (6%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| ||||| || ||| | || ||||| || || || || || || |
Sbjct 4081 CATGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 4140
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707
|| ||| ||| | ||| || || |||||||||| | |||||| ||| | ||||
Sbjct 4141 CAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCC 4200
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGTTTCG 132765
| | | || || || | |||||| |||||||| ||||| ||| ||| |||| |
Sbjct 4201 AAGCG---CAACAAGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTT--G 4255
Query 132766 CAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGC 132824
| || | || ||||| |||| || || || || || || || ||||| ||
Sbjct 4256 GAGTTCATGCCGAGCAGGGCGCAA-GGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTT 4314
Query 132825 GACCGCGTCGGTGACGATTTCCC---TAACGCGCGCCGCGCTCGGCCGTTGCACCAAATG 132881
||| || ||| | ||| ||| |||| || ||| || || | | | ||
Sbjct 4315 GACAGCATCGACAATGATGTCCTCGATAACCTGCTT---GCTGGGGCGGTTCTTGAGGTG 4371
Query 132882 CTTGAACATCAAG---CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938
||| | |||| || || |||||| |||| |||||||| | || ||||| ||
Sbjct 4372 G--GAATA-CAAGAGACAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTC 4428
Query 132939 GTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAA 132998
|||| ||| |||| || |||||||| || || || |||||||| || |||| |||||
Sbjct 4429 GTTGGAGAAGGTCAGACCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAA 4488
Query 132999 ACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT 133058
|| |||||||| |||||||||||| || || || |||||||||| | |||| |
Sbjct 4489 GGCACCACTAAAGAAGATGCCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGA 4548
Query 133059 GG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
|| ||||| | ||| ||||| || ||||| ||||||||
Sbjct 4549 GGACTTCTCATCGCT---AATCCACTTGAGGGCCCAGTCGGCCTT 4590
>seq1916
Length=1946
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| | || || ||| | ||
Sbjct 1362 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1303
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| |||||||
Sbjct 1302 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 1243
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || || ||||| || |||| |||||||| ||||||||||
Sbjct 1242 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 1183
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || |||| || ||
Sbjct 1182 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCG 1148
>seq3878
Length=33396
Score = 105 bits (116), Expect = 7e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| |||||||| | || |||||| || | || | | | | |||| | ||
Sbjct 28646 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACG-TGAAGTC 28704
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| |||| ||||| ||||| || || |||| || ||||| || || | ||| |||||
Sbjct 28705 CAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCAA 28764
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
||||| || |||| ||||||||| ||||||||||||||| ||||| | || || ||
Sbjct 28765 GCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 28824
Query 38447 TTTGGTGCTGCG 38458
||||| || ||
Sbjct 28825 CTTGGTTCTCCG 28836
Score = 105 bits (116), Expect = 7e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| |||||||| |||| || ||| || |||||| | |
Sbjct 28916 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCG 28975
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| ||||| ||||| || || ||||||| || || | |
Sbjct 28976 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGA 29035
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| ||||| || || | || || || ||||||||||||||| ||||
Sbjct 29036 TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGG 29095
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || || || |||||||| |||
Sbjct 29096 AATCTACTCTCCACTTGGTGCTTCGT 29121
Score = 105 bits (116), Expect = 7e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
||||||| ||||| ||||| || ||| | ||||| ||||| || |||| ||| || ||
Sbjct 29446 AAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTGATTTTCGCTGGAAAG 29505
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| ||||| |||| |||||||| | ||| ||||||||||| ||||| |||| || ||
Sbjct 29506 CAACTGGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAGTCGACTCTCCAC 29565
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
| || || ||| || | |||||
Sbjct 29566 CTTGTCCTTCGTCTGCGTGGCGG 29588
>seq3617
Length=84999
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||| ||| | || |||||| || | |||| |
Sbjct 45419 TTCGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 45360
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||| ||||| |
Sbjct 45359 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 45300
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | |||||||| ||||||||||||||| |||
Sbjct 45299 ATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAG 45240
Query 38433 G 38433
|
Sbjct 45239 G 45239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500145553086720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |