Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3337 136 4e-27 seq1916 122 9e-23 seq3878 105 7e-18 seq3617 96.9 3e-15 >seq3337 Length=46210 Score = 136 bits (150), Expect = 4e-27 Identities = 196/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| || | || || || | ||||||||| || || || Sbjct 4720 GTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAATGGATGTTCTCCATCATAATCTGGAA 4779 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || || || || || ||| ||| || || || ||| |||||||||| || Sbjct 4780 GCCATAGAAACAGCGGGCTTCGGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAGTT 4839 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || ||||||||||||||| ||||| || ||||| || | |||| |||||| | Sbjct 4840 CTCATTGACGATGCCGTCGGAAGCGGCAAAGAAGGCGAGAATGTGCGAGATGAAGTACTT 4899 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | ||||||| || |||||||||| ||| | |||||| Sbjct 4900 CTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCAATCTCCTC 4959 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || |||||||| || |||||||| Sbjct 4960 TGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 4995 Score = 122 bits (134), Expect = 9e-23 Identities = 350/525 (67%), Gaps = 30/525 (6%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||||| || ||| | || ||||| || || || || || || | Sbjct 4081 CATGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 4140 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 || ||| ||| | ||| || || |||||||||| | |||||| ||| | |||| Sbjct 4141 CAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCC 4200 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGTTTCG 132765 | | | || || || | |||||| |||||||| ||||| ||| ||| |||| | Sbjct 4201 AAGCG---CAACAAGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTT--G 4255 Query 132766 CAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGC 132824 | || | || ||||| |||| || || || || || || || ||||| || Sbjct 4256 GAGTTCATGCCGAGCAGGGCGCAA-GGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTT 4314 Query 132825 GACCGCGTCGGTGACGATTTCCC---TAACGCGCGCCGCGCTCGGCCGTTGCACCAAATG 132881 ||| || ||| | ||| ||| |||| || ||| || || | | | || Sbjct 4315 GACAGCATCGACAATGATGTCCTCGATAACCTGCTT---GCTGGGGCGGTTCTTGAGGTG 4371 Query 132882 CTTGAACATCAAG---CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938 ||| | |||| || || |||||| |||| |||||||| | || ||||| || Sbjct 4372 G--GAATA-CAAGAGACAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTC 4428 Query 132939 GTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAA 132998 |||| ||| |||| || |||||||| || || || |||||||| || |||| ||||| Sbjct 4429 GTTGGAGAAGGTCAGACCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAA 4488 Query 132999 ACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT 133058 || |||||||| |||||||||||| || || || |||||||||| | |||| | Sbjct 4489 GGCACCACTAAAGAAGATGCCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGA 4548 Query 133059 GG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || ||||| | ||| ||||| || ||||| |||||||| Sbjct 4549 GGACTTCTCATCGCT---AATCCACTTGAGGGCCCAGTCGGCCTT 4590 >seq1916 Length=1946 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 1362 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1303 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 1302 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 1243 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| |||||||| |||||||||| Sbjct 1242 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 1183 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 1182 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCG 1148 >seq3878 Length=33396 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| | || |||||| || | || | | | | |||| | || Sbjct 28646 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACG-TGAAGTC 28704 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || || |||| || ||||| || || | ||| ||||| Sbjct 28705 CAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCAA 28764 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| ||||||||| ||||||||||||||| ||||| | || || || Sbjct 28765 GCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 28824 Query 38447 TTTGGTGCTGCG 38458 ||||| || || Sbjct 28825 CTTGGTTCTCCG 28836 Score = 105 bits (116), Expect = 7e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| |||| || ||| || |||||| | | Sbjct 28916 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCG 28975 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| || || ||||||| || || | | Sbjct 28976 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGA 29035 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | || ||||| ||||| || || | || || || ||||||||||||||| |||| Sbjct 29036 TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGG 29095 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || |||||||| ||| Sbjct 29096 AATCTACTCTCCACTTGGTGCTTCGT 29121 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||||| ||||| ||||| || ||| | ||||| ||||| || |||| ||| || || Sbjct 29446 AAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTGATTTTCGCTGGAAAG 29505 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || ||||| |||| |||||||| | ||| ||||||||||| ||||| |||| || || Sbjct 29506 CAACTGGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAGTCGACTCTCCAC 29565 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||| || | ||||| Sbjct 29566 CTTGTCCTTCGTCTGCGTGGCGG 29588 >seq3617 Length=84999 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||| ||| | || |||||| || | |||| | Sbjct 45419 TTCGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 45360 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 45359 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 45300 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | |||||||| ||||||||||||||| ||| Sbjct 45299 ATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAG 45240 Query 38433 G 38433 | Sbjct 45239 G 45239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500145553086720