Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq215 318 7e-82 seq2795 145 1e-29 >seq215 Length=41279 Score = 318 bits (352), Expect = 7e-82 Identities = 673/1000 (67%), Gaps = 7/1000 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 30720 ATGGCGGCCTGGACGGCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 30661 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || || | | | || || ||||| || || || Sbjct 30660 GGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGGATACGGGTGGAA 30601 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||||| || || || | || | || || |||||||| | ||| || Sbjct 30600 CCTCCGACCAGGACAATCTCGTGGACCTGGGACTTGTCGATCTTGGCGTCGGTGAGGACG 30541 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | || ||||||| |||| ||||| ||||| || || ||| Sbjct 30540 CGGTCGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCACAGCTCCTCGAAGCGGGCA 30481 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| |||| ||| ||||| | ||| || || || |||| || Sbjct 30480 CGGGTGATGGAGGTGTAGAAGTCAATGCCCTCGTAGAGCGAGTCGATCTCGATGGAGGTC 30421 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||| || | || ||||| || ||||| || || || || | || || || Sbjct 30420 TGGGCAGACGAGGACAGGGTGCGCTTCGCACGCTCGCAGGCGGTGCGCAGGCGGCGCAGC 30361 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTG 7440 || || | ||| ||| | || ||||| || || || || ||||| || | | ||||| Sbjct 30360 GCGCGGGCGTTGGTGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACA-AAGTG 30302 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | || | || || || |||||||||||||| || || || ||||||| || Sbjct 30301 GTTGACCAGACGGTTGTCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTCGACTT 30242 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| || ||||| || | ||||| | | | || ||||| || || ||||| || || Sbjct 30241 GACCTCGAAGATGCCCTCCTCAATCGTCAGGAGGGACACATCGAAAGTGCCACCGCCAAG 30182 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 ||| || ||||| ||||| ||| | || ||||| || |||||||| || || || Sbjct 30181 GTCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGGCAATGGC 30122 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 ||||| || || || || || || || || ||| ||||| ||||| | || || Sbjct 30121 AGCCGCAGTCGGCTCGTTGATGATGCGGAGCACGTTGAGGCCCGCAATGAGACCGGCGTC 30062 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || ||||| || || ||||| ||||| |||||||| || ||||| || || |||| | Sbjct 30061 CTTGGTCGCCTGGCGCTGCGAGTCGTTGAAGTAGGCGGGCACCGTGACAACGGCGTTGTT 30002 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGA 7800 |||| | ||||| ||||| || || | || ||||| ||||| || ||||| | || Sbjct 30001 GACTGTGCCGCCGAGGTACGACTCGGCCGTCTCCTTCATCTTGGTGAGGACCATGGCAGA 29942 Query 7801 AATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 ||||| || | | || || || || || || || || || || ||| ||| || Sbjct 29941 GATCTCCTCTGGGGTGAAGACCTTGGTCTCGCCCTTGAACTCGACCTCGATCGCGGGCTT 29882 Query 7861 ATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTT 7919 || | | | || ||||| ||| | | ||||| ||| | || |||| Sbjct 29881 ----GCCGTTCTTGTCAATCACCTTGAACGGGAAGTGCTTCATGTCGGCCTGCACCTCCG 29826 Query 7920 GGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCA 7979 |||| ||||| | ||||| |||||||| || || || || ||||| | ||||||| Sbjct 29825 GGTCGTTGAACTTGCGACCGATCAGACGCTTCGCGTCGAACACGGTGTTGTGAGGGTTCA 29766 Query 7980 TGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 | || |||||||| ||||| || ||||| || || || Sbjct 29765 TCGCCACCTGGTTCTTGGCCGCATCTCCGATGAGGCGCTC 29726 >seq2795 Length=109175 Score = 145 bits (160), Expect = 1e-29 Identities = 345/516 (67%), Gaps = 13/516 (3%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAA--TGGATG-TATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| | || || | ||| ||| || ||| | | || Sbjct 106685 TCCTCGAAACGGGCACGGGTGAGCTGAGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 106629 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| || || || || | ||| || ||||| || ||||| || | Sbjct 106628 TCAATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 106571 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | |||||| |||||||| |||| || || | || ||||| || || | Sbjct 106570 CAGTGCGAAGACGACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 106511 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| ||||| | | ||||| || | |||||||||||| | Sbjct 106510 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGGG 106451 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || ||||| || ||||| |||| ||| || | ||||| | | ||||||| Sbjct 106450 TGTCACCGGCGGTAGCCTTGACCGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 106391 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598 | || ||||||||||||| ||| | || || ||||| || | | | ||| Sbjct 106390 CGAAAGTACCACCACCCAAGTCGTAGATAAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 106331 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||| | Sbjct 106330 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 106271 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||| || || | | ||||| || || || || || || ||||| |||||||| | Sbjct 106270 GGCCGGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 106211 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| || | ||| || | | || ||||| |||| Sbjct 106210 GGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGA 106175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635098201140720