Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq245 150 2e-31
seq799 100 3e-16
>seq245
Length=98725
Score = 150 bits (166), Expect = 2e-31
Identities = 1008/1604 (63%), Gaps = 63/1604 (4%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
||| | |||||| ||||| |||||||| ||||| || || ||||| | | | | |
Sbjct 90914 GTTGAGCGACTGCGACTGGTCGATGAAGGCGCCACGGTCGGCAGCCATTTGCACAACGGT 90855
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
| || || |||||||| ||||||||||||| ||||| || |||||||
Sbjct 90854 GCGCT---GGGAGATTTCCCAAACAGTCTTGTACAGCGCCTTGACCTCGGTAGGAATGTT 90798
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA 109673
|||||| |||||||| ||| || | |||| | | |||||| | | ||
Sbjct 90797 GGGGATGTTCTGAATAGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATAGCGTCAGA 90741
Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCA 109731
||| | || | | ||| || | ||||| | | ||||| || || ||
Sbjct 90740 CCACAAGCCCATGTCGACGAGGTCCTT--CAAGAGCCAAGGGTTGACGACTTGGAACTCG 90683
Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791
|||||||| || || |||| ||||| | ||||| |||||||| ||||| |||||
Sbjct 90682 CCAGCAAGGACACGACGCTGGTAAATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTA 90623
Query 109792 CCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851
|| | ||| || | ||| || || |||||||| || | ||| ||| ||| |||| |
Sbjct 90622 CCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACA 90563
Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911
|| | | ||| | | |||| || | ||||| || | || | | | || | |
Sbjct 90562 CCGTGCTGCTTGATCTGCTCCTTCAGAGAATCCCAGTCCCAGAGATC-CGAGGGTTTGAC 90504
Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971
|| |||||| || || || | |||| || | |||| ||||||| | ||
Sbjct 90503 -----ATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCATACGTC 90449
Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATA 110031
| || | ||||| ||| |||||||| || || || || || || ||
Sbjct 90448 TGATAGGGGCCCTCCTCCTTGGCCAACTGAACCGACATGGTAAGGGCAGCGTGGTAGATT 90389
Query 110032 GTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAA----G 110084
||||| || || | || ||||| |||| || | |||||||| | |
Sbjct 90388 GTCTCGAAGATCTTC---TTGTTGAGGTCACGAGCTTCGGGGGACTCGAAGGGCATGCGG 90332
Query 110085 ACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144
| | ||||| |||| || ||||||||||||||||||||||||||||| ||
Sbjct 90331 AGGGCCAAGAAGG----CATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCG 90276
Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204
|||||| | ||||| | || ||||| |||| ||||||| | |||||
Sbjct 90275 CATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACATCGATGATTCTGTTGAG 90216
Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCG--AACGTTTTCGTC 110262
|| || || |||| || || || || | | | ||| ||| ||||
Sbjct 90215 GTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCGTAAACACCCTCGTT 90156
Query 110263 TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322
| | || | |||| || |||| || || || |||||||| | ||| ||
Sbjct 90155 G--TAGTCAACGAAGGTGGGCAGCGCAAGCGAGGCCAGGTTGCACACTGCGACCTCATCA 90098
Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382
|| ||| || | || || || || | |||||| | ||| ||||| ||||
Sbjct 90097 GGAGCGCAGTACTCAATGATCTCAGTGCATAGGTTGGAGTTACGGATGGTACCCAGGTTC 90038
Query 110383 TTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCC 110442
||||| || ||| |||| |||||||| |||||||| | ||| ||||||| ||
Sbjct 90037 TTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCG 89978
Query 110443 GTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGT-TAGCGA- 110500
|| || | || ||| ||||| | ||| | || ||| | | | || | ||||
Sbjct 89977 GTTTGAGCCTCGAGGATGGCATACCAGA-----GCTTTTGGGCCTTTAGGGTCTTGCGAC 89923
Query 110501 ----GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCA 110556
| || || | ||||||||| ||||| | |||| ||||||| ||||| ||
Sbjct 89922 CTTTGCCCATC-TGCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCG 89864
Query 110557 GAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTC 110616
| ||||| || || ||| || | ||| | ||| | || || ||| || |||
Sbjct 89863 GCGAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTC 89804
Query 110617 TTCATGAACAGGTCAGGAATCCACATCGCCGAGAAA-AGGTCACGGCAACGAGCCTCTTC 110675
|||||||| || || || ||||| | | ||||||| |||||||| || |||| ||
Sbjct 89803 TTCATGAAGAGATCGGGGATCCAGA-GGGCGAGAAATAGGTCACGAGCGCGGACCTCCTC 89745
Query 110676 ATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAG 110735
| || ||||| ||| || ||||| ||||| | | ||| | |||||| || |||||
Sbjct 89744 CTTCCCATGGTTCTTGCGCAGATCCAAGAAGTCAAATACATCAGCGTGCCAAGGCTCGAG 89685
Query 110736 ATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792
|||| || | | || || || |||||| || ||||| || |||
Sbjct 89684 GTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCGCCCTGGTCGACGTAGCGGGCAGTGTT 89625
Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852
|||||||| | |||||| |||| | || | || || || || || |||
Sbjct 89624 GTTGAAGACACGGAGCATGGGAACGACGCCGTTAGAGGTGCCGTTGGTGCCAGCAATGTA 89565
Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912
|| | || || ||| ||||| | | |||||| ||||| ||| ||| ||
Sbjct 89564 AGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGAT 89505
Query 110913 TTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAA 110971
||||| ||| |||| || | || ||||| || || || || |||| | | |
Sbjct 89504 CATAGCACAGGTCT-TGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGA 89446
Query 110972 TTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCG 111031
|| || ||||| |||| ||| | | || || || || ||||||||||| || | |
Sbjct 89445 CAAGGAAACAAGAGGACAGCTGCGCCTGGGGGGTACCGGCGTTGAAGAGTGTGGGAGAGG 89386
Query 111032 CATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGA 111073
| || ||| ||| |||| |||||| |||||| || ||||
Sbjct 89385 CGTGGGTGA--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGA 89344
>seq799
Length=14066
Score = 100 bits (110), Expect = 3e-16
Identities = 330/504 (65%), Gaps = 17/504 (3%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| |||||||| || || || | || || | || || || ||| | ||||| || |
Sbjct 3173 CGGTCGAAACGGCCGGGACGCATCAGGGCCTTGTCGAGGATGTCGGCTCGGTTGGTGCCC 3232
Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619
|| | || || | || | ||| | ||| ||| |||||||| || ||||| | ||||
Sbjct 3233 GCGAGCACAACCA--CCTG-CTCCTGGGTGTTGAAGCCGTCCATCTCGGTGAGGATCTGG 3289
Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA---CCTGCCGAACGCTTCTTA 11676
|| | ||| || ||||| |||||| | ||| | || || | | |
Sbjct 3290 TTCAGCGTGGCCTCGCGCTCGTCGTTGCCGCCCATGCGGTTGCCCTCCTGTCTCGACCGG 3349
Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736
|||| ||||| ||||| || ||||| | ||| || || ||| || ||| ||
Sbjct 3350 CCGATGGCGTCGATCTCGTCAATGAAGATGATGCAAGGGGCGTTCTTCCGCGCCGTCGCG 3409
Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGG 11794
|| || || || || | | || ||||| ||||||||||| ||||| | | | |
Sbjct 3410 AACAGGTCGCGGACTCTGGAGGGGCCGACACCCACGAACATCTCGACGAACTCGGAACCG 3469
Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854
| | | ||||| ||||||||| |||||| || || |||| ||||| || ||||
Sbjct 3470 CTCA-CGCTGAA-GAAGGGAACGCCAGACTCGCCGGCCGTGGCCTTGGCGAGCAGCGTCT 3527
Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCC 11912
|||| || || || | || || || | || || |||||||||||||| || || ||
Sbjct 3528 TACCGGTTCCGGGAGGGCCGGCCAGGATAGCACCGCGGGGGATCTTGGCGCCTAACCTC- 3586
Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972
| | ||||| || ||||||||||| |||| |||| || ||| ||||||
Sbjct 3587 -TCGAACCGCTCCGGGGTCTTGAGGAAGCTGACAAACTCCATAATCTCCGTCTTGGCCTC 3645
Query 11973 GTCGATACCCTCAACATCGGTGAA 11996
||| || || | || ||| ||||
Sbjct 3646 GTCCATGCCGGCGACGTCGCTGAA 3669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588943915532400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |