Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq245 132 6e-26 seq3337 89.7 6e-13 >seq245 Length=98725 Score = 132 bits (146), Expect = 6e-26 Identities = 546/855 (64%), Gaps = 21/855 (2%) Strand=Plus/Minus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || |||| ||||| || || |||||| | | |||||| | || || || || Sbjct 90127 GAGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCAGTGCAT 90068 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | |||||| | || || |||| ||||| ||||| ||||| |||| |||||| Sbjct 90067 AGGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 90008 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACA 106648 ||||||||||| |||| | || ||||| || || | || ||| || || | ||| | Sbjct 90007 TTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGC 89948 Query 106649 TCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGG 106705 | ||| || || ||| | || | ||| | ||||||||| ||| ||| Sbjct 89947 TTTTGGGCCTTTAG---GGTCTTGCGACCTTTGCCCATCTGCTCGTACTTCTCGTACAGG 89891 Query 106706 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 106765 || || || ||||| || ||||| |||||| || || || || || | ||| Sbjct 89890 GCCTCGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAGA 89831 Query 106766 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 106825 | ||| | || || ||| || | ||||||||| || || || ||||| |||| | Sbjct 89830 GTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGCGAGA 89771 Query 106826 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885 || || || | | || |||| || | || ||||| || | || | ||| || Sbjct 89770 AATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTCA 89711 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACG 106938 | | ||| |||||||| ||||| || |||| || | || || ||| | || Sbjct 89710 AATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCG 89651 Query 106939 CCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACC 106998 ||| | | || | ||||| || ||| ||| || || || ||||| |||| | || Sbjct 89650 CCCTGGTCGA----CGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCC 89595 Query 106999 ATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTG 107058 | || || || || || ||| ||| | || | | |||| || Sbjct 89594 GTTAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTT 89535 Query 107059 CATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGAT 107118 | ||||| || |||||| ||| ||||| ||||| | | || || | ||||| Sbjct 89534 GAGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGAT 89475 Query 107119 ACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGG 107178 ||| | ||| ||||||||||| | ||| |||||| ||| ||||| ||||| || Sbjct 89474 ACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGG 89415 Query 107179 TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTG 107236 ||||| || |||||||| || || | ||||| ||| | | |||| |||||| | Sbjct 89414 GGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTCGACATCAGG 89357 Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296 | ||| ||||| | || |||| || || || ||| |||| || |||||||| Sbjct 89356 TTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCGACAGCAACACGCATG 89297 Query 107297 AACATGTATTGGGGT 107311 | ||||| |||||| Sbjct 89296 ATCATGTGCTGGGGT 89282 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | ||||| ||||| ||||| || || ||||||||||| || | |||| | Sbjct 90661 TAAATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGCTG 90602 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || || | | ||| ||| || | ||| | | |||||| | ||| Sbjct 90601 GCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCC 90542 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAA 106112 || ||| ||||||||| || || | ||||| || || |||||| || | || | Sbjct 90541 TTCAGAGAATCCCAGTCCCAG-AGATCCGAGGGTTTGACATT-CCACATGTCGTACTGGA 90484 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 | | || || || || ||||||||| | |||| ||||| Sbjct 90483 GGATGCCCTGAGAAACAGGGGAACCCTCATACGTCTGATAGG 90442 >seq3337 Length=46210 Score = 89.7 bits (98), Expect = 6e-13 Identities = 343/533 (64%), Gaps = 27/533 (5%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct 4100 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 4159 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 117099 ||||| || || || | || | | | | || || | |||| ||| Sbjct 4160 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAAGCGCAACA------AGG 4213 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 ||||| || | || |||||||||||| |||| | |||||||| |||| || Sbjct 4214 AGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGG 4273 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || || ||| | |||| | | |||||||| || || || | |||| Sbjct 4274 GCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATGATG 4333 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | | |||| | | |||| | | || | | | ||||| || ||| Sbjct 4334 TCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAATACAAGAGA--CA-GGCG 4390 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| |||||||| || || || || || || || |||||| || || ||| Sbjct 4391 AAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGC 4450 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | || | ||| | || |||||||| ||| Sbjct 4451 ATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCCC 4510 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAAC 117453 || || ||||| |||| ||||||| |||||||||| ||||| || || | Sbjct 4511 TCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGAG---GACTTCTCATCGCTAATC 4567 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || || | ||||| | |||||||| ||| || || || || |||||| Sbjct 4568 CACTTGAGGGCCCAGTCGGCCTTCTTGCGAATGCAAGGGACTGT---GATGGC 4617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589948660795920