Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq245 132 6e-26
seq3337 89.7 6e-13
>seq245
Length=98725
Score = 132 bits (146), Expect = 6e-26
Identities = 546/855 (64%), Gaps = 21/855 (2%)
Strand=Plus/Minus
Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528
|| |||| ||||| || || |||||| | | |||||| | || || || ||
Sbjct 90127 GAGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCAGTGCAT 90068
Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588
| |||||| | || || |||| ||||| ||||| ||||| |||| ||||||
Sbjct 90067 AGGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 90008
Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACA 106648
||||||||||| |||| | || ||||| || || | || ||| || || | ||| |
Sbjct 90007 TTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGC 89948
Query 106649 TCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGG 106705
| ||| || || ||| | || | ||| | ||||||||| ||| |||
Sbjct 89947 TTTTGGGCCTTTAG---GGTCTTGCGACCTTTGCCCATCTGCTCGTACTTCTCGTACAGG 89891
Query 106706 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 106765
|| || || ||||| || ||||| |||||| || || || || || | |||
Sbjct 89890 GCCTCGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAGA 89831
Query 106766 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 106825
| ||| | || || ||| || | ||||||||| || || || ||||| |||| |
Sbjct 89830 GTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGCGAGA 89771
Query 106826 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885
|| || || | | || |||| || | || ||||| || | || | ||| ||
Sbjct 89770 AATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTCA 89711
Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACG 106938
| | ||| |||||||| ||||| || |||| || | || || ||| | ||
Sbjct 89710 AATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCG 89651
Query 106939 CCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACC 106998
||| | | || | ||||| || ||| ||| || || || ||||| |||| | ||
Sbjct 89650 CCCTGGTCGA----CGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCC 89595
Query 106999 ATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTG 107058
| || || || || || ||| ||| | || | | |||| ||
Sbjct 89594 GTTAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTT 89535
Query 107059 CATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGAT 107118
| ||||| || |||||| ||| ||||| ||||| | | || || | |||||
Sbjct 89534 GAGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGAT 89475
Query 107119 ACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGG 107178
||| | ||| ||||||||||| | ||| |||||| ||| ||||| ||||| ||
Sbjct 89474 ACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGG 89415
Query 107179 TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTG 107236
||||| || |||||||| || || | ||||| ||| | | |||| |||||| |
Sbjct 89414 GGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTCGACATCAGG 89357
Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296
| ||| ||||| | || |||| || || || ||| |||| || ||||||||
Sbjct 89356 TTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCGACAGCAACACGCATG 89297
Query 107297 AACATGTATTGGGGT 107311
| ||||| ||||||
Sbjct 89296 ATCATGTGCTGGGGT 89282
Score = 84.2 bits (92), Expect = 3e-11
Identities = 154/222 (69%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994
|| ||||| | ||||| ||||| ||||| || || ||||||||||| || | |||| |
Sbjct 90661 TAAATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGCTG 90602
Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054
|| || ||||| || || | | ||| ||| || | ||| | | |||||| | |||
Sbjct 90601 GCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCC 90542
Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAA 106112
|| ||| ||||||||| || || | ||||| || || |||||| || | || |
Sbjct 90541 TTCAGAGAATCCCAGTCCCAG-AGATCCGAGGGTTTGACATT-CCACATGTCGTACTGGA 90484
Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154
| | || || || || ||||||||| | |||| |||||
Sbjct 90483 GGATGCCCTGAGAAACAGGGGAACCCTCATACGTCTGATAGG 90442
>seq3337
Length=46210
Score = 89.7 bits (98), Expect = 6e-13
Identities = 343/533 (64%), Gaps = 27/533 (5%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| |||| |||||||| |||||||||||||| || | ||| ||||| |||||
Sbjct 4100 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 4159
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 117099
||||| || || || | || | | | | || || | |||| |||
Sbjct 4160 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAAGCGCAACA------AGG 4213
Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159
||||| || | || |||||||||||| |||| | |||||||| |||| ||
Sbjct 4214 AGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGG 4273
Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219
|| || || || ||| | |||| | | |||||||| || || || | ||||
Sbjct 4274 GCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATGATG 4333
Query 117220 GCGTGGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276
| | |||| | | |||| | | || | | | ||||| || |||
Sbjct 4334 TCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAATACAAGAGA--CA-GGCG 4390
Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336
|| || ||| |||||||| || || || || || || || |||||| || || |||
Sbjct 4391 AAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGC 4450
Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396
|||||||| |||||||| | ||| | || | ||| | || |||||||| |||
Sbjct 4451 ATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCCC 4510
Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAAC 117453
|| || ||||| |||| ||||||| |||||||||| ||||| || || |
Sbjct 4511 TCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGAG---GACTTCTCATCGCTAATC 4567
Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506
|| || | ||||| | |||||||| ||| || || || || ||||||
Sbjct 4568 CACTTGAGGGCCCAGTCGGCCTTCTTGCGAATGCAAGGGACTGT---GATGGC 4617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589948660795920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |