Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3878 156 9e-33 seq1916 129 1e-24 seq245 89.7 1e-12 >seq3878 Length=33396 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| || || || || || ||||| |||| ||||| | ||||| ||| Sbjct 29342 ACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCG 29283 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || ||||| ||||| ||||| ||||| || ||||| ||| Sbjct 29282 AGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGA 29223 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| || ||| || ||||| || | ||||||| Sbjct 29222 ATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTCTTT 29163 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 29162 CCAGTAAGCGTCTTGACGAAGATCTGCAT 29134 Score = 116 bits (128), Expect = 8e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| || || || || || ||||| |||| ||||| | ||||| |||||||| Sbjct 29109 GTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTG 29050 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | ||||| ||||| ||||| ||||| || ||||| || || || Sbjct 29049 CTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 28990 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| || || || || || || | ||||| || || Sbjct 28989 GGACTTGACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTCTTGCCAGT 28930 Query 195117 CAAAGTTTTTACGA 195130 | ||| || |||| Sbjct 28929 GAGAGTCTTGACGA 28916 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||||||||| || || || ||||| |||| || || | || || || Sbjct 28831 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 28772 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||||||||| || || || || ||||| || || || ||||| || Sbjct 28771 AAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTG 28712 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| || ||||| || || || || ||||| || | ||||| Sbjct 28711 GATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTCTT 28652 Query 195111 TCCTGT 195116 || || Sbjct 28651 GCCGGT 28646 >seq1916 Length=1946 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | || || ||| Sbjct 1154 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 1213 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 1214 AGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1273 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || ||||| |||||||| | ||||| Sbjct 1274 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 1333 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1334 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1362 >seq245 Length=98725 Score = 89.7 bits (98), Expect = 1e-12 Identities = 185/274 (68%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 160588 TTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTG 160647 ||||| |||| |||||| ||||||| ||||||||||||||| | | || || || || Sbjct 89769 TTTCT-CGCCCTCTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGAACGGCGACTG 89827 Query 160648 GAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGA 160707 || || | || ||||| || ||||| || | || || || || ||||| Sbjct 89828 GACTCTCATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGCTACGGCGAGGAATTCGA 89887 Query 160708 GACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767 | | || || || | ||||| | ||| | || ||| | | ||||||||| | Sbjct 89888 GGCCCTGTACGAGAAGTACGAGCAGATGGGCAAAGGTCGCAAGACCCTAAAGGCCCAAAA 89947 Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827 || ||| || |||||| | || ||| |||| |||| |||||||| ||||| Sbjct 89948 GCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACTGGTAACCCCTTTATGCTCTACAA 90007 Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 |||||| | |||||||| |||||||||||| Sbjct 90008 GGATGCTGCCAACCGCAAGAGCAACCAGAAGAAC 90041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109419650014586