Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3878 156 9e-33
seq1916 129 1e-24
seq245 89.7 1e-12
>seq3878
Length=33396
Score = 156 bits (172), Expect = 9e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| || || || || || ||||| |||| ||||| | ||||| |||
Sbjct 29342 ACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCG 29283
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || ||||| ||||| ||||| ||||| || ||||| |||
Sbjct 29282 AGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGA 29223
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| ||||||||||| || ||| || ||||| || | |||||||
Sbjct 29222 ATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTCTTT 29163
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 29162 CCAGTAAGCGTCTTGACGAAGATCTGCAT 29134
Score = 116 bits (128), Expect = 8e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||| || || || || || ||||| |||| ||||| | ||||| ||||||||
Sbjct 29109 GTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTG 29050
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| | ||||| ||||| ||||| ||||| || ||||| || || ||
Sbjct 29049 CTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 28990
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || |||||||| || || || || || || | ||||| || ||
Sbjct 28989 GGACTTGACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTCTTGCCAGT 28930
Query 195117 CAAAGTTTTTACGA 195130
| ||| || ||||
Sbjct 28929 GAGAGTCTTGACGA 28916
Score = 105 bits (116), Expect = 1e-17
Identities = 135/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| ||||||||||| || || || ||||| |||| || || | || || ||
Sbjct 28831 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 28772
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || ||||||||||| || || || || ||||| || || || ||||| ||
Sbjct 28771 AAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTG 28712
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||| ||||| || ||||| || || || || ||||| || | |||||
Sbjct 28711 GATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTCTT 28652
Query 195111 TCCTGT 195116
|| ||
Sbjct 28651 GCCGGT 28646
>seq1916
Length=1946
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| || || | || || |||
Sbjct 1154 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 1213
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 1214 AGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1273
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||||| |||||||| | |||||
Sbjct 1274 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 1333
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 1334 CCCGTGAGGGTCTTGACGAAGATCTGCAT 1362
>seq245
Length=98725
Score = 89.7 bits (98), Expect = 1e-12
Identities = 185/274 (68%), Gaps = 1/274 (0%)
Strand=Plus/Plus
Query 160588 TTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTG 160647
||||| |||| |||||| ||||||| ||||||||||||||| | | || || || ||
Sbjct 89769 TTTCT-CGCCCTCTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGAACGGCGACTG 89827
Query 160648 GAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGA 160707
|| || | || ||||| || ||||| || | || || || || |||||
Sbjct 89828 GACTCTCATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGCTACGGCGAGGAATTCGA 89887
Query 160708 GACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767
| | || || || | ||||| | ||| | || ||| | | ||||||||| |
Sbjct 89888 GGCCCTGTACGAGAAGTACGAGCAGATGGGCAAAGGTCGCAAGACCCTAAAGGCCCAAAA 89947
Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827
|| ||| || |||||| | || ||| |||| |||| |||||||| |||||
Sbjct 89948 GCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACTGGTAACCCCTTTATGCTCTACAA 90007
Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861
|||||| | |||||||| ||||||||||||
Sbjct 90008 GGATGCTGCCAACCGCAAGAGCAACCAGAAGAAC 90041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109419650014586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |