Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq855 95.1 1e-14 >seq855 Length=37984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 188/274 (69%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 ||||| || || ||| |||| |||||| | | | ||| |||||| || || || Sbjct 2483 AGCTGGTCGACACCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCGCCAAAG 2542 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || | ||| ||||| || || || || || ||||| || |||| | |||| || ||| Sbjct 2543 TGTCGCCATTGGAATCCATAGACTGGGCCGAGGTCGCCGACTTCTCGGTGCGAGAGGCCG 2602 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30294 |||||| || || | || |||||| ||||||| ||||| | ||| |||| Sbjct 2603 ACACTGTCCAGGAACTCACGTGAGCCGTTGCCGTCCCAAATCTTGATGCCCGCCTCGCTC 2662 Query 30295 AGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30353 ||| ||| |||| ||||| ||||||||||||||| || | | |||||| Sbjct 2663 AGCGGCAGAGAGGATGTGTTGCCCTC-GACGAACCACAGCAGTTCGGCAATGACGGC--G 2719 Query 30354 CCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 | || ||||| | ||| || ||||||||||||| Sbjct 2720 CGAAGGAAGACGCGCTTCGTAGTGAGGAGGGGAA 2753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408595897042334