Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq245 315 1e-80 seq3337 152 1e-31 >seq245 Length=98725 Score = 315 bits (348), Expect = 1e-80 Identities = 1042/1596 (65%), Gaps = 72/1596 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | |||||||||| ||||| || ||||||||||| ||||| Sbjct 91042 ACAGTGAACTGAATAGGCGCTGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 90983 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| | |||||| |||| ||| |||| | ||| | Sbjct 90982 AGTCCGAGCTT---CCAGCCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATAGT 90933 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | | |||| | ||| || ||||| |||||| ||||| | | | Sbjct 90932 CGGGTCTTTCATGTGG---------ATGTTGAGCGACTGCGACTGGTCGATGAAGGCGCC 90882 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | | | |||||||| ||||| || |||||| | | Sbjct 90881 ACGGTCGGCAGCCATTTGCACAACGGTGCGCTGGGAGATTTCCCAAACAGTCTTGTACAG 90822 Query 212789 TTCTTTGAGGTCCTCTG--GGAA-GCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGT 212845 | |||| |||| | |||| | |||||||||||| | ||| || || | | | Sbjct 90821 CGCCTTGA---CCTCGGTAGGAATGTTGGGGATGTTCTGAATAGAACC---GT-TCTCGG 90769 Query 212846 CA--GCTGCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCA 212901 || | ||| | ||| | || ||| | |||| || | ||| ||| | | Sbjct 90768 CAATGATGCGGTTCTTCATAGCGTCAGACCACAAGCCCATGTCGACGAGGTCCTTCAAGA 90709 Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961 | ||||||||| | ||||| || || | || || | | |||||||| ||| || | Sbjct 90708 GCCAAGGGTTGACGACTTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTGGAGG 90649 Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021 |||| || |||| || ||||||||| |||| ||||| | |||||||| || ||||||| Sbjct 90648 TGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGG 90589 Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCC 213081 | || || || ||| ||| | || ||||||| ||| | | || ||| Sbjct 90588 GCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAATCCC 90529 Query 213082 AGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGC 213141 ||||||| || ||| | || || ||||||||||| |||| | ||||| Sbjct 90528 AGTCCCAG---------AGATCCGAGGGTTTGACATTCCACATGTCGTACTGGAGGATGC 90478 Query 213142 CTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGC 213201 | | || ||| |||| || | |||||||| | ||||||||||| || Sbjct 90477 CCTGAGAAACAGGGGAACCCTCATACGTCTGATAGGGGCCCTCCTCCTTGGCCAACTGAA 90418 Query 213202 AGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 ||| |||||||||| |||||| || || || |||| | ||||||| | | Sbjct 90417 CCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGGTCACGAG 90358 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 | || |||||| ||||||||| | | ||| |||| || || ||||| || | Sbjct 90357 CTTCGGGGGACTCGAAGGGCATGCGGAGGGCCAAGAAGGCATCGGCAAGACCCTGAACAC 90298 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380 ||| || ||||| | ||| | || ||| ||| |||| ||||| | ||||| | Sbjct 90297 CGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGGACCGGGTAGTGG 90239 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| |||||||| ||||||||||||| | | || | |||||| | | || | | Sbjct 90238 TTGACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTC 90179 Query 213441 TCGTGATTGAACACGTAGCCCCC--GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCA 213498 | | | | | || | || | || | || || ||||| || | ||||| Sbjct 90178 TGGAAGTCGTAAAC--ACCCTCGTTGTAGTCAACGAAGGTGGGCAGCGCAAGCGAGGCCA 90121 Query 213499 GGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 ||||||| || || ||||| | || | |||||| |||||||| ||||| |||||| Sbjct 90120 GGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCAGTGCATAGGTTGG 90061 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGA 213618 | |||||||| |||||||||| ||||| ||| |||||||| ||||||||||| Sbjct 90060 AGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGA 90001 Query 213619 GCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCT 213676 |||| ||||| || ||||| || | | | || || ||| |||||| | Sbjct 90000 GCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGAT--GGCATACCAGAGCTTTTG 89943 Query 213677 GGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTT 213736 |||||| | | | ||| || | | | |||||||| ||||| || | | Sbjct 89942 GGCCTTTAGGGTCTTGC-GAC--CTTTGCCCATCTGCTCGTACTTCTCGTACAGGGCCTC 89886 Query 213737 GAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCA 213796 |||||| | ||| || | | || || || || ||| |||||||| |||| Sbjct 89885 GAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCA 89826 Query 213797 GTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 ||| |||| | |||| ||||||| |||||| || || |||| ||| || ||| || | Sbjct 89825 GTCGCCGTTCTTCTCC-ACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGCGAGAAATA 89767 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 |||| | | | ||| ||| ||| ||| ||||||||||| | |||||||| | Sbjct 89766 GGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTCAAATA 89707 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCT 213972 || |||||||| ||||| | |||||||||||| || || || | |||| ||||||| Sbjct 89706 CATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCGCCCT 89647 Query 213973 GGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACT 214032 |||| || | ||| ||||||||| || || | ||| || | ||||| || Sbjct 89646 GGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTTAGAGG 89587 Query 214033 GTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGC 214088 |||||||| || || || || ||||||| || | || ||| |||| ||| Sbjct 89586 TGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGACGTTGAGA 89531 Query 214089 CCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124 || |||||||| || |||||||||||| || ||| Sbjct 89530 CCAATGCCACCAGCCATCTTGGAGATCATAGCACAG 89495 >seq3337 Length=46210 Score = 152 bits (168), Expect = 1e-31 Identities = 339/504 (67%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| | || | ||||| |||||||| ||||| || ||| |||||||||||| Sbjct 4097 TGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCC 4156 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 |||||| ||||||||||| | || || ||| | ||| | | | || || Sbjct 4157 ATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAAGCGCAACAAGGAGA 4216 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 | || || ||| |||| ||||| | ||| ||| || ||||||||| | |||| Sbjct 4217 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGGCG 4276 Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079 || | ||||| || || ||||||| ||| |||| || || || | | || | | Sbjct 4277 CAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATGATGTCC 4336 Query 48080 T---TAACGCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | |||| | | ||| || | || ||| ||||| || ||| | | ||||| Sbjct 4337 TCGATAAC-CTGCTTGCTGGGGCGGTTCTTG---AGGTG---GGAATACAAGAGACAGGC 4389 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| |||||| || ||||| || ||||||| ||||||||||| ||||| || Sbjct 4390 GAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGG 4449 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || ||||||||||| || | ||||| | ||| ||||||||||| Sbjct 4450 CATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCC 4509 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || || || || || | || |||| || | |||| || ||||| Sbjct 4510 CTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGAGGACTTCTCATCGCTAATCCA 4569 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTT 48339 || |||||||| |||||||| Sbjct 4570 CTTGAGGGCCCAGTCGGCCTTCTT 4593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931482054750720