Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq245 324 3e-83
seq3337 140 6e-28
>seq245
Length=98725
Score = 324 bits (358), Expect = 3e-83
Identities = 850/1277 (67%), Gaps = 45/1277 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
|| ||||||||||||||||| ||||| |||||| |||||||||| || | || |||||
Sbjct 90409 GTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGG-TCACGAGCTTCGGG 90351
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
|| ||||||||| || || | ||| | ||||| || ||||| || |||| |||
Sbjct 90350 GGACTCGAAGGGCATGCGGAGGGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACC 90291
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
||||| | ||| | | ||||| | ||| | || |||| |||| || ||||||
Sbjct 90290 AATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGGACCGGG-TAGTGGTTGACA 90233
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
||||| | |||||||||| || || ||| | |||||| |||||||||
Sbjct 90232 TCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTCTGGAAG 90173
Query 221654 TTG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
| | |||||| |||| || || || || || | | || ||||
Sbjct 90172 TCGTAAACACC--CTCGT--------TGTAG----TCAACGAAGGTGGGCAGCGCAAGCG 90127
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771
||||||||| ||||| || ||||| || | |||| |||||||| || || |
Sbjct 90126 AGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCAGTGCATA 90067
Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831
||||| | |||||| ||||||| || || || |||||| |||||||| ||||
Sbjct 90066 GGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCT 90007
Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891
|||||||||||||||| |||||||| |||||| | || || | |||||| |
Sbjct 90006 TGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCT 89947
Query 221892 CTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGAG 221949
| ||| | | ||| | || ||| ||| || ||| | ||| || |
Sbjct 89946 TTTGGGCCTTTAGGGTCTTGCGACCTTTGCCCA---TCTGCTCGTACTTCTCGTACAGGG 89890
Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009
| | | || | || ||||| ||| | || || || ||| | ||| ||||| ||
Sbjct 89889 CCT--CGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAG 89832
Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069
| |||||| ||| | | || |||| ||||||||| || |||||||| || || |
Sbjct 89831 AGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGCGAG 89772
Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129
||| || || | | || ||||||| || | ||| || | ||||||||| || ||
Sbjct 89771 AAATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTC 89712
Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189
||| | ||||||||||| ||||| || |||| ||| | ||| ||||| |||||||| ||
Sbjct 89711 AAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCC 89652
Query 222190 ACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248
||||| || || | | || | |||||||| || || | || || | ||||
Sbjct 89651 GCCCTGGTCGACGTAGCGGGC-AGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGT 89593
Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308
| || ||||||||||| |||||| | ||| || | || | | || |||
Sbjct 89592 TAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGACG 89537
Query 222309 TG----CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364
| || || ||||| || || |||||||| || ||| ||||||| ||||| |
Sbjct 89536 TTGAGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAG 89477
Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424
|| ||||| |||||||||||||| | | | || |||||||| |||| ||| | | |
Sbjct 89476 ATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGG 89417
Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484
| || || |||||| || || |||||| |||||| || ||| | || ||||||||
Sbjct 89416 GGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTCGACATCAGG 89357
Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCAT 222543
| ||| ||||| | || | | | |||||| ||| || || | | || | |||
Sbjct 89356 TTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCG-ACAGCAACACGCAT 89298
Query 222544 GTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601
| ||||| |||||| ||||| || || | |||| || ||||| ||| |
Sbjct 89297 GATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TCAGGAGGTAAGATCTC 89240
Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661
|||| |||||||| || ||||| | | || ||||| | | ||| || | ||| | |
Sbjct 89239 TCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGAG 89180
Query 222662 TCCAGCTCCGACTTGTG 222678
|| |||||| ||||||
Sbjct 89179 TCAAGCTCCTCCTTGTG 89163
>seq3337
Length=46210
Score = 140 bits (154), Expect = 6e-28
Identities = 325/493 (66%), Gaps = 11/493 (2%)
Strand=Plus/Minus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||||| | |||||||| | | ||| | | || | | |||| ||||| ||||||
Sbjct 4581 TGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCGCCTGGTTGCCTTT 4522
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
||||| || ||||||||||| || || ||| | || || ||||||||||||||||| ||
Sbjct 4521 GCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTTCTGGCTCAAGAAG 4462
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| |||||| || ||| ||| ||||||||||||||| | |||||||||||
Sbjct 4461 CGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTG 4402
Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACCTTCTCAAG 26071
|||| || || ||||| || | || | |||| ||| | || || ||||
Sbjct 4401 CACACCGACTTCGCCTGTCTCTTGTATTC---CCAC---CTCAAGAACCGCCCCAGCAAG 4348
Query 26072 -AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130
|| || | ||||| || ||||| |||| ||| ||||||| |
Sbjct 4347 CAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAG 4288
Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190
| ||||||||| || || |||| || ||||||||||
Sbjct 4287 GCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTC 4228
Query 26191 GTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249
|| ||||||| ||| | ||| | ||| || || | |||||| | | |||||
Sbjct 4227 GTTGCCGACCGTCTCCTTGTTGC-GCTTGGCAACGAAAAGGTCTACAAGTCTTCCAACCC 4169
Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309
|||||||| ||||| ||||| || ||| || |||||||||||||| || ||| | ||
Sbjct 4168 CTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 4109
Query 26310 CGGCGACTATCAA 26322
| |||||| |||
Sbjct 4108 TGCCGACTACCAA 4096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928794201179520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |