Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq245 324 3e-83 seq3337 140 6e-28 >seq245 Length=98725 Score = 324 bits (358), Expect = 3e-83 Identities = 850/1277 (67%), Gaps = 45/1277 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || ||||||||||||||||| ||||| |||||| |||||||||| || | || ||||| Sbjct 90409 GTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGG-TCACGAGCTTCGGG 90351 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||||||||| || || | ||| | ||||| || ||||| || |||| ||| Sbjct 90350 GGACTCGAAGGGCATGCGGAGGGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACC 90291 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| | ||| | | ||||| | ||| | || |||| |||| || |||||| Sbjct 90290 AATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGGACCGGG-TAGTGGTTGACA 90233 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | |||||||||| || || ||| | |||||| ||||||||| Sbjct 90232 TCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTCTGGAAG 90173 Query 221654 TTG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | |||||| |||| || || || || || | | || |||| Sbjct 90172 TCGTAAACACC--CTCGT--------TGTAG----TCAACGAAGGTGGGCAGCGCAAGCG 90127 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||||||||| ||||| || ||||| || | |||| |||||||| || || | Sbjct 90126 AGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCAGTGCATA 90067 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| | |||||| ||||||| || || || |||||| |||||||| |||| Sbjct 90066 GGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCT 90007 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||||||||||||||| |||||||| |||||| | || || | |||||| | Sbjct 90006 TGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCT 89947 Query 221892 CTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGAG 221949 | ||| | | ||| | || ||| ||| || ||| | ||| || | Sbjct 89946 TTTGGGCCTTTAGGGTCTTGCGACCTTTGCCCA---TCTGCTCGTACTTCTCGTACAGGG 89890 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | | | || | || ||||| ||| | || || || ||| | ||| ||||| || Sbjct 89889 CCT--CGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAG 89832 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 | |||||| ||| | | || |||| ||||||||| || |||||||| || || | Sbjct 89831 AGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGCGAG 89772 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 ||| || || | | || ||||||| || | ||| || | ||||||||| || || Sbjct 89771 AAATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTC 89712 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| | ||||||||||| ||||| || |||| ||| | ||| ||||| |||||||| || Sbjct 89711 AAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCC 89652 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 ||||| || || | | || | |||||||| || || | || || | |||| Sbjct 89651 GCCCTGGTCGACGTAGCGGGC-AGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGT 89593 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308 | || ||||||||||| |||||| | ||| || | || | | || ||| Sbjct 89592 TAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGACG 89537 Query 222309 TG----CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 | || || ||||| || || |||||||| || ||| ||||||| ||||| | Sbjct 89536 TTGAGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAG 89477 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 || ||||| |||||||||||||| | | | || |||||||| |||| ||| | | | Sbjct 89476 ATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGG 89417 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 | || || |||||| || || |||||| |||||| || ||| | || |||||||| Sbjct 89416 GGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTCGACATCAGG 89357 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCAT 222543 | ||| ||||| | || | | | |||||| ||| || || | | || | ||| Sbjct 89356 TTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCG-ACAGCAACACGCAT 89298 Query 222544 GTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601 | ||||| |||||| ||||| || || | |||| || ||||| ||| | Sbjct 89297 GATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TCAGGAGGTAAGATCTC 89240 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661 |||| |||||||| || ||||| | | || ||||| | | ||| || | ||| | | Sbjct 89239 TCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGAG 89180 Query 222662 TCCAGCTCCGACTTGTG 222678 || |||||| |||||| Sbjct 89179 TCAAGCTCCTCCTTGTG 89163 >seq3337 Length=46210 Score = 140 bits (154), Expect = 6e-28 Identities = 325/493 (66%), Gaps = 11/493 (2%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| | |||||||| | | ||| | | || | | |||| ||||| |||||| Sbjct 4581 TGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCGCCTGGTTGCCTTT 4522 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 ||||| || ||||||||||| || || ||| | || || ||||||||||||||||| || Sbjct 4521 GCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTTCTGGCTCAAGAAG 4462 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || ||| ||| ||||||||||||||| | ||||||||||| Sbjct 4461 CGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTG 4402 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACCTTCTCAAG 26071 |||| || || ||||| || | || | |||| ||| | || || |||| Sbjct 4401 CACACCGACTTCGCCTGTCTCTTGTATTC---CCAC---CTCAAGAACCGCCCCAGCAAG 4348 Query 26072 -AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 || || | ||||| || ||||| |||| ||| ||||||| | Sbjct 4347 CAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAG 4288 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | ||||||||| || || |||| || |||||||||| Sbjct 4287 GCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTC 4228 Query 26191 GTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249 || ||||||| ||| | ||| | ||| || || | |||||| | | ||||| Sbjct 4227 GTTGCCGACCGTCTCCTTGTTGC-GCTTGGCAACGAAAAGGTCTACAAGTCTTCCAACCC 4169 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| | || Sbjct 4168 CTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 4109 Query 26310 CGGCGACTATCAA 26322 | |||||| ||| Sbjct 4108 TGCCGACTACCAA 4096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928794201179520