Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq245 140 4e-28 seq3441 91.5 2e-13 seq3337 89.7 6e-13 >seq245 Length=98725 Score = 140 bits (154), Expect = 4e-28 Identities = 881/1401 (63%), Gaps = 43/1401 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || |||| ||| || || || |||| || Sbjct 89283 CCCCAGCACATGATCATGCGTGTTGCTGTCGGAATCTGGGGCGACAACGTTGAGCGCGTT 89342 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| ||| || |||||| |||| | | ||| ||||| | || || |||| Sbjct 89343 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT--TCACCCACGCCTCTCCCACACTCT 89400 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || ||||| || ||||| ||||| ||| |||||| ||| | ||||||| Sbjct 89401 TCAACGCCGGTACCCCCCAGGCGCAGCTGTCCTCTTGTTTCCTTGTCGATATGAAGGAGG 89460 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 |||| ||| | |||||||| | || || | | ||||| ||||| ||| ||||| Sbjct 89461 ACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCTG 89520 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | || ||||| | || |||| | | || | ||| ||| || || | Sbjct 89521 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCACCA 89580 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || | |||| ||||| || || || ||| ||| || ||||| | Sbjct 89581 ACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCAACAACACTGCCCGCTACG 89640 Query 75570 TAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 | | || | || ||| | | || | | || ||||| | || || |||| Sbjct 89641 TCGACCAGGGCGGAAACAAGCGCCCC---GGTGCTTTTGCCATCTACCTCGAGCCTTGGC 89697 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 | || ||| | | || ||| | || | || ||||| || | || |||| || Sbjct 89698 ACGCTGATGTATTTGACTTCTTGGATCTGCGCAAGAACCATGGGAAGGAGGAGGTCCGCG 89757 Query 75684 GTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | | || || ||| |||| ||||| || || || ||||||||| | || ||| || Sbjct 89758 CTCGTGACCTATTTCTCGCCCTCTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGA 89817 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 || | ||| |||| | || || || || || |||||| ||||| || | Sbjct 89818 ACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGCTACGGCG 89877 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGACTG 75860 |||| || || ||||| ||| ||||| || || ||| | || ||| ||| Sbjct 89878 AGGAATTCGAGGCCCTGTACGAGAAGTACGAGCAGATGGGCAAAGGTCGCAA---GACCC 89934 Query 75861 TACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 || ||| | | ||| | || || ||| | | || || |||||||| | || | Sbjct 89935 TAAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACTGGTAACCCCT 89994 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 |||||| |||||||||||| ||| ||||| ||||| ||||| |||| || ||| Sbjct 89995 TTATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCC 90054 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 | ||| || || ||||| || || | |||||| | | |||||| || || | Sbjct 90055 GTAACTCCAACCTATGCACTGAGATCATTGAGTACTGCGCTCCTGATGAGGTCGCAGTGT 90114 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGA-CTCGCACTTTT--G 76097 |||| |||| || | || || || | | || ||| | | | | ||| | Sbjct 90115 GCAACCTGGCCTCGCTTGCGCTGCCCACCTTCGT---TGACTACAACGAGGGTGTTTACG 90171 Query 76098 ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 | | | || ||||| || |||| || | || || || ||| || |||| | Sbjct 90172 ACTTCCAGAAGCTTCACGAGGTCACCCAGGTCGTCGTTCGCAACCTCAACAGAATCATCG 90231 Query 76158 ACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 | || || || || || || || || || ||||| ||| | || |||| Sbjct 90232 ATGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATTG 90291 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCAT-----TTGA 76272 || | |||||||| ||||| || |||| || ||| ||| || ||||| | || Sbjct 90292 GTCTCGGTGTTCAGGGTCTTGCCGATGCCTTC---TTG-GCC-CTCCGCATGCCCTTCGA 90346 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 || ||||| || | || ||||| || || || || ||||| |||| Sbjct 90347 GTCCCCCGAAGCTCGTGACCTCAACAAGAAGATCTTCGAGACAATCTACCACGCTGCCCT 90406 Query 76333 GGAGGCGAGTTG--TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCT 76390 | || | | | ||||| | | | || ||||| |||| | ||||||||| Sbjct 90407 TAC--CATGTCGGTTCAGTTGGCCAAGGAGGAGGGCCCCTATCAGACGTATGAGGGTTCC 90464 Query 76391 CCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAACT 76448 || | || || || | || |||| || |||||| || || ||||| | || || Sbjct 90465 CCTGTTTCTCAGGGCATCCTCCAGTACGACATGTGG-AATGTCAAACCCTCGGATCT-CT 90522 Query 76449 ACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 76508 ||||||||| ||| ||||| | |||||| || | ||| | || ||| ||| | Sbjct 90523 GGGACTGGGATTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCG 90582 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 | || || ||||| || ||| |||| | || ||||||||||| || || ||||| |||| Sbjct 90583 TCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGTAACAACGAGTGCTTCGAAC 90642 Query 76569 CATACACAACAAACATCTACC 76589 | ||||| | ||||| |||| Sbjct 90643 CTTACACCTCCAACATTTACC 90663 >seq3441 Length=28323 Score = 91.5 bits (100), Expect = 2e-13 Identities = 198/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Minus Query 13607 TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCT 13666 || ||||||||| |||| || ||||| || || || | | || ||||| |||| | | Sbjct 19371 TGCACTCTCATTCTCACCGAAGGTGACTCTGCCAAGAGTTTGGCTGTTGCCGGTCGCGCA 19312 Query 13667 GTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA-TGTAAGAATGTTCG 13725 | | | | || | | ||| || ||||| ||||| |||||| ||| ||| || || Sbjct 19311 ATTCTCGACCCCGACCGCATCGGAGTCTTCCCCCTTCGTGGTAAAATGTT-GAACGTCCG 19253 Query 13726 GGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCT 13785 ||||| || | | ||| |||| |||||||| || | | ||||| || |||| Sbjct 19252 TGACGCATCCATCGACCAGATCACGAAGAACCAGGAAATCCAGAACATCAAGCAGTTCCT 19193 Query 13786 TGGTCTTCA--ACAAGGAAAAGACTACCAAGATGTTTCTGAA----CTTCGCTATGGTCG 13839 ||||| | ||||| | | |||| |||| ||| || |||||||||| Sbjct 19192 CGGTCTGAAGCACAAGCAGAC--CTACACAGATAC----GAAGAGTCTACGCTATGGTCA 19139 Query 13840 TCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCT 13890 ||| ||||| ||| | ||| ||| | || |||||||||||||||||||| Sbjct 19138 TCTGATGATCATGGCCGATCAGGATCACGACGGTTCTCACATCAAGGGTCT 19088 >seq3337 Length=46210 Score = 89.7 bits (98), Expect = 6e-13 Identities = 343/533 (64%), Gaps = 27/533 (5%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT--- 65052 |||||| || || || || ||| |||||||| | ||||| | || ||| || Sbjct 4617 GCCATC---ACAGTCCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGC 4561 Query 65053 GACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 || ||||| |||||||||| ||||||| |||| ||||| || ||||| ||| Sbjct 4560 GATGAGAAGTC---CTCCTTCGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGCATC 4504 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||| || | ||| | || | ||| | |||||||| ||||||||||| || Sbjct 4503 TTCTTTAGTGGTGCCTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGT 4444 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||||| || || || || || || || |||||||| ||| || || ||| || Sbjct 4443 CTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCC-TG 4385 Query 65233 GAGCTCTTCAAGACTTTGCGTAATA---GACCCACTACCGAAACTATCCACGCCATCGTG 65289 ||||| | | | || | | |||| | | |||| | | |||| | Sbjct 4384 --TCTCTTGTATTCCCACCTCAAGAACCGCCCCAGCAAGCAGGTTATCGAGGACATCATT 4327 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || |||||||| | | |||| | ||| || || || || || || Sbjct 4326 GTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTTCCTTGCGCCCTGCTC 4267 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||| | |||| |||||||||||| || | || |||||||| Sbjct 4266 GGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTCCT---- 4211 Query 65410 CAAGTTG-GGGTGCCACCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAA 65463 |||| | || || | | | | || | || || || ||||| ||||| Sbjct 4210 --TGTTGCGCTTGGCAACGAAAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAG 4153 Query 65464 AACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||| ||| | || |||||||||||||| |||||||| |||| ||||| Sbjct 4152 AACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTA 4100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596537101871040