Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq215 387 2e-102 seq3878 187 3e-42 seq1916 170 3e-37 >seq215 Length=41279 Score = 387 bits (428), Expect = 2e-102 Identities = 966/1461 (66%), Gaps = 16/1461 (1%) Strand=Plus/Plus Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || || ||| | |||||||| || || || ||| || ||||||||| ||| || || Sbjct 29726 GAGCGCCTCATCGGAGATGCGGCCAAGAACCAGGTGGCGATGAACCCTCACAACACCGTG 29785 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || |||||||||||||| || ||||||||||| || | | || || | ||| || Sbjct 29786 TTCGACGCGAAGCGTCTGATCGGTCGCAAGTTCAACGACCCGGAGGTGCAGGCCGACATG 29845 Query 195545 AAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 ||| ||| | | | ||| || | | | ||| ||||| ||| | || | Sbjct 29846 AAGCACTTCCCGT-TCAAGGTGATTGACAAGAACGGC----AAGCCCGCGATCGAGGTCG 29900 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | || | || |||| || || | || || || || || | ||||| | | | Sbjct 29901 AGTTCAAGGGCGAGACCAAGGTCTTCACCCCAGAGGAGATCTCTGCCATGGTCCTCACCA 29960 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||||||||||| || || || | | | || || || || | || ||||| || | Sbjct 29961 AGATGAAGGAGACGGCCGAGTCGTACCTCGGCGGCACAGTCAACAACGCCGTTGTCACGG 30020 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || || |||||||| |||||||| | | ||||||| Sbjct 30021 TGCCCGCCTACTTCAACGACTCGCAGCGCCAGGCGACCAAGGACGCCGGTCTCATTGCGG 30080 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 | || ||| || | || ||||| || || || |||||||| ||||| || ||||| | Sbjct 30081 GCCTCAACGTGCTCCGCATCATCAACGAGCCGACTGCGGCTGCCATTGCCTACGGTCTTG 30140 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||||| || | || || || | ||||| || || || ||||| || || | Sbjct 30141 ACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGACCTTGGCGGTGGCACTTTCG 30200 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 |||| || || || | ||||| | || || ||||| || ||| | || |||||||| | Sbjct 30201 ATGTGTCCCTCCTGACGATTGAGGAGGGCATCTTCGAGGTCAAGTCGACCGCTGGTGACA 30260 Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTC 196021 |||| | |||||||| || || || ||||| || || |||||| | |||||| Sbjct 30261 CTCACTTGGGTGGTGAGGACTTTGACAACCGTCTGGTCAACCACTTTGTC-AACGAGTTC 30319 Query 196022 CGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACT 196081 || ||| | ||||| || | || || | | || || || || || | || Sbjct 30320 AAGCGCAAGCACAAGAAGGACCTGTCCACCAACGCCCGCGCGCTGCGCCGCCTGCGCACC 30379 Query 196082 GCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGAT 196141 || || || ||||| || || || || || || | || || || | ||||| || Sbjct 30380 GCCTGCGAGCGTGCGAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCCATCGAGATCGAC 30439 Query 196142 TCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTA 196201 ||| | | || || ||||||||||| || | || |||||||| || || || ||| | Sbjct 30440 TCGCTCTACGAGGGCATTGACTTCTACACCTCCATCACCCGTGCCCGCTTCGAGGAGCTG 30499 Query 196202 AACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAG 196261 | || |||| | || | || || || | || || ||||| ||| Sbjct 30500 TGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTCCTCACCGACGCCAAG 30559 Query 196262 ATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAG 196321 || || ||||| |||| | || |||||||| || ||||| || |||||||| || Sbjct 30560 ATCGACAAGTCCCAGGTCCACGAGATTGTCCTGGTCGGAGGTTCCACCCGTATCCCCCGC 30619 Query 196322 ATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCG 196381 || || || | | || || |||||| || || ||||| | |||||||| Sbjct 30620 ATCCAGAAGCTCATCTCCGACTACTTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCC 30679 Query 196382 GATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT-----GTTG 196436 ||||| || ||||| || ||||| ||||| ||||| || ||||| || ||| || Sbjct 30680 GATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGCCATTCTGTCCGGTGACACGTCT 30739 Query 196437 ACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTG 196496 | | | || | ||||| ||||| || ||||| || ||| | ||||| ||| | | Sbjct 30740 TCCAAGAGCACCAACGAGATC--CTGCTTCTCGATGTCGCTCCCCTCTCCCTCGGTATCG 30797 Query 196497 AAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGA 196556 | || || ||||| | ||||| || | || | ||||| || || || || |||| Sbjct 30798 AGACCGCCGGTGGCATGATGACCAAGCTCATCCCCCGCAACACCACCATCCCCACCAAGA 30857 Query 196557 AGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATG 196616 || | ||||| || || | || || || || || ||||| | || || || || | Sbjct 30858 AGTCCGAGGTCTTCTCGACCTTCTCGGACAACCAGCCCGGTGTCCTCATCCAGGTCTACG 30917 Query 196617 AAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGA 196676 | || || ||| || | ||||| ||| | || || || | ||||| | || || | Sbjct 30918 AGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGGCAAGTTCGAGCTTACCGGCA 30977 Query 196677 TTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATG 196736 | || | || ||| | ||||| || ||||| | || ||||||| | ||||| || | Sbjct 30978 TCCCCCCCGCCCCCCGCGGTGTCCCCCAGATCGAGGTCACCTTCGATCTTGACGCCAACG 31037 Query 196737 GAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTA 196796 | || | |||||| | || | || |||| | ||||| || | |||||||| || | Sbjct 31038 GTATCATGAACGTCTCCGCCGTCGAGAAGGGCACCGGCAAGTCCAACAAGATTGTCATCA 31097 Query 196797 CCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAA 196856 |||| |||||||| || ||||| |||||||| ||||| || ||| | || || || | Sbjct 31098 CCAACGACAAGGGCCGCCTTTCCAAGGAGGACATTGAGCGCATGCTCGCCGAGGCCGAGA 31157 Query 196857 AGTACAGGGAAGAAGACGAGG 196877 ||| || ||| || ||||||| Sbjct 31158 AGTTCAAGGACGAGGACGAGG 31178 >seq3878 Length=33396 Score = 187 bits (206), Expect = 3e-42 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || ||||||||||| || ||||| || |||||||| | Sbjct 29129 GTGGTATGCAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAAT 29188 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | |||||||| || || ||| |||| | |||||||| || ||||| ||||| || |||| Sbjct 29189 CATCAGACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCG 29248 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | |||||||| || || ||||| || || ||||| || ||||| ||||| || | || | Sbjct 29249 ACCAGCAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACT 29308 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || ||||| |||||||| ||||| || || | || || || ||| Sbjct 29309 ACAACATCCAGAAGGAATCTACTCTCCACCTCGTCCTTCGCCTGCGCGGAGGT 29361 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||||||||| || ||| | || ||||| || || || | ||||||||||| | Sbjct 29360 GTATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACGATTACGTTGGAGGTTGAGTCTT 29419 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| |||| |||| || ||||| ||||| || || || || || | Sbjct 29420 CTGACACTATCGACAACGTCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACC 29479 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || || ||||| ||||| || || || || || || || ||||| ||||||| Sbjct 29480 AGCAGCGCCTGATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGCGATTACA 29539 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || |||||||| ||||| |||||||| || | || || || ||| Sbjct 29540 ACATCCAGAAGGAGTCGACTCTCCACCTTGTCCTTCGTCTGCGTGGCGGT 29589 Score = 156 bits (172), Expect = 6e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171884 TTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAG 171943 |||| || || || ||||| || ||||| ||||| || || || ||||| ||| | || Sbjct 28644 TTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGT 28703 Query 171944 CCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTA 172003 ||||||| || || ||||| || || || ||||||||||| || ||||| || ||||| | Sbjct 28704 CCAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCA 28763 Query 172004 AACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTAC 172063 | |||||||| || || || |||||| | || |||||| | || |||||||| ||||| | Sbjct 28764 AGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCC 28823 Query 172064 ACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | ||||| | || || |||||| Sbjct 28824 ACTTGGTTCTCCGCCTCCGTGGTGGT 28849 >seq1916 Length=1946 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||| ||||| |||||||| Sbjct 1362 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1303 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| ||| Sbjct 1302 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 1243 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 1242 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 1183 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || |||||||| || || ||||| || || | || || ||||||| Sbjct 1182 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGCCTGCGCGGTGGTG 1134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657826562945760