Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq215 387 2e-102
seq3878 187 3e-42
seq1916 170 3e-37
>seq215
Length=41279
Score = 387 bits (428), Expect = 2e-102
Identities = 966/1461 (66%), Gaps = 16/1461 (1%)
Strand=Plus/Plus
Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484
|| || ||| | |||||||| || || || ||| || ||||||||| ||| || ||
Sbjct 29726 GAGCGCCTCATCGGAGATGCGGCCAAGAACCAGGTGGCGATGAACCCTCACAACACCGTG 29785
Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544
|| |||||||||||||| || ||||||||||| || | | || || | ||| ||
Sbjct 29786 TTCGACGCGAAGCGTCTGATCGGTCGCAAGTTCAACGACCCGGAGGTGCAGGCCGACATG 29845
Query 195545 AAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602
||| ||| | | | ||| || | | | ||| ||||| ||| | || |
Sbjct 29846 AAGCACTTCCCGT-TCAAGGTGATTGACAAGAACGGC----AAGCCCGCGATCGAGGTCG 29900
Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662
| || | || |||| || || | || || || || || | ||||| | | |
Sbjct 29901 AGTTCAAGGGCGAGACCAAGGTCTTCACCCCAGAGGAGATCTCTGCCATGGTCCTCACCA 29960
Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722
||||||||||||| || || || | | | || || || || | || ||||| || |
Sbjct 29961 AGATGAAGGAGACGGCCGAGTCGTACCTCGGCGGCACAGTCAACAACGCCGTTGTCACGG 30020
Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782
| || || ||||||| || || || || |||||||| |||||||| | | |||||||
Sbjct 30021 TGCCCGCCTACTTCAACGACTCGCAGCGCCAGGCGACCAAGGACGCCGGTCTCATTGCGG 30080
Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842
| || ||| || | || ||||| || || || |||||||| ||||| || ||||| |
Sbjct 30081 GCCTCAACGTGCTCCGCATCATCAACGAGCCGACTGCGGCTGCCATTGCCTACGGTCTTG 30140
Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902
||||||| || | || || || | ||||| || || || ||||| || || |
Sbjct 30141 ACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGACCTTGGCGGTGGCACTTTCG 30200
Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962
|||| || || || | ||||| | || || ||||| || ||| | || |||||||| |
Sbjct 30201 ATGTGTCCCTCCTGACGATTGAGGAGGGCATCTTCGAGGTCAAGTCGACCGCTGGTGACA 30260
Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTC 196021
|||| | |||||||| || || || ||||| || || |||||| | ||||||
Sbjct 30261 CTCACTTGGGTGGTGAGGACTTTGACAACCGTCTGGTCAACCACTTTGTC-AACGAGTTC 30319
Query 196022 CGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACT 196081
|| ||| | ||||| || | || || | | || || || || || | ||
Sbjct 30320 AAGCGCAAGCACAAGAAGGACCTGTCCACCAACGCCCGCGCGCTGCGCCGCCTGCGCACC 30379
Query 196082 GCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGAT 196141
|| || || ||||| || || || || || || | || || || | ||||| ||
Sbjct 30380 GCCTGCGAGCGTGCGAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCCATCGAGATCGAC 30439
Query 196142 TCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTA 196201
||| | | || || ||||||||||| || | || |||||||| || || || ||| |
Sbjct 30440 TCGCTCTACGAGGGCATTGACTTCTACACCTCCATCACCCGTGCCCGCTTCGAGGAGCTG 30499
Query 196202 AACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAG 196261
| || |||| | || | || || || | || || ||||| |||
Sbjct 30500 TGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTCCTCACCGACGCCAAG 30559
Query 196262 ATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAG 196321
|| || ||||| |||| | || |||||||| || ||||| || |||||||| ||
Sbjct 30560 ATCGACAAGTCCCAGGTCCACGAGATTGTCCTGGTCGGAGGTTCCACCCGTATCCCCCGC 30619
Query 196322 ATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCG 196381
|| || || | | || || |||||| || || ||||| | ||||||||
Sbjct 30620 ATCCAGAAGCTCATCTCCGACTACTTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCC 30679
Query 196382 GATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT-----GTTG 196436
||||| || ||||| || ||||| ||||| ||||| || ||||| || ||| ||
Sbjct 30680 GATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGCCATTCTGTCCGGTGACACGTCT 30739
Query 196437 ACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTG 196496
| | | || | ||||| ||||| || ||||| || ||| | ||||| ||| | |
Sbjct 30740 TCCAAGAGCACCAACGAGATC--CTGCTTCTCGATGTCGCTCCCCTCTCCCTCGGTATCG 30797
Query 196497 AAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGA 196556
| || || ||||| | ||||| || | || | ||||| || || || || ||||
Sbjct 30798 AGACCGCCGGTGGCATGATGACCAAGCTCATCCCCCGCAACACCACCATCCCCACCAAGA 30857
Query 196557 AGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATG 196616
|| | ||||| || || | || || || || || ||||| | || || || || |
Sbjct 30858 AGTCCGAGGTCTTCTCGACCTTCTCGGACAACCAGCCCGGTGTCCTCATCCAGGTCTACG 30917
Query 196617 AAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGA 196676
| || || ||| || | ||||| ||| | || || || | ||||| | || || |
Sbjct 30918 AGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGGCAAGTTCGAGCTTACCGGCA 30977
Query 196677 TTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATG 196736
| || | || ||| | ||||| || ||||| | || ||||||| | ||||| || |
Sbjct 30978 TCCCCCCCGCCCCCCGCGGTGTCCCCCAGATCGAGGTCACCTTCGATCTTGACGCCAACG 31037
Query 196737 GAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTA 196796
| || | |||||| | || | || |||| | ||||| || | |||||||| || |
Sbjct 31038 GTATCATGAACGTCTCCGCCGTCGAGAAGGGCACCGGCAAGTCCAACAAGATTGTCATCA 31097
Query 196797 CCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAA 196856
|||| |||||||| || ||||| |||||||| ||||| || ||| | || || || |
Sbjct 31098 CCAACGACAAGGGCCGCCTTTCCAAGGAGGACATTGAGCGCATGCTCGCCGAGGCCGAGA 31157
Query 196857 AGTACAGGGAAGAAGACGAGG 196877
||| || ||| || |||||||
Sbjct 31158 AGTTCAAGGACGAGGACGAGG 31178
>seq3878
Length=33396
Score = 187 bits (206), Expect = 3e-42
Identities = 181/233 (78%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| ||||| || || || ||||||||||| || ||||| || |||||||| |
Sbjct 29129 GTGGTATGCAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAAT 29188
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| |||||||| || || ||| |||| | |||||||| || ||||| ||||| || ||||
Sbjct 29189 CATCAGACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCG 29248
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| |||||||| || || ||||| || || ||||| || ||||| ||||| || | || |
Sbjct 29249 ACCAGCAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACT 29308
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| | || ||||| |||||||| ||||| || || | || || || |||
Sbjct 29309 ACAACATCCAGAAGGAATCTACTCTCCACCTCGTCCTTCGCCTGCGCGGAGGT 29361
Score = 167 bits (184), Expect = 3e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
|||||||||||||||| || ||| | || ||||| || || || | ||||||||||| |
Sbjct 29360 GTATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACGATTACGTTGGAGGTTGAGTCTT 29419
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
| ||||| ||||| ||| |||| |||| || ||||| ||||| || || || || || |
Sbjct 29420 CTGACACTATCGACAACGTCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACC 29479
Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039
|||| || || ||||| ||||| || || || || || || || ||||| |||||||
Sbjct 29480 AGCAGCGCCTGATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGCGATTACA 29539
Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| | || |||||||| ||||| |||||||| || | || || || |||
Sbjct 29540 ACATCCAGAAGGAGTCGACTCTCCACCTTGTCCTTCGTCTGCGTGGCGGT 29589
Score = 156 bits (172), Expect = 6e-33
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 171884 TTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAG 171943
|||| || || || ||||| || ||||| ||||| || || || ||||| ||| | ||
Sbjct 28644 TTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGT 28703
Query 171944 CCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTA 172003
||||||| || || ||||| || || || ||||||||||| || ||||| || ||||| |
Sbjct 28704 CCAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCA 28763
Query 172004 AACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTAC 172063
| |||||||| || || || |||||| | || |||||| | || |||||||| ||||| |
Sbjct 28764 AGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCC 28823
Query 172064 ACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| | ||||| | || || ||||||
Sbjct 28824 ACTTGGTTCTCCGCCTCCGTGGTGGT 28849
>seq1916
Length=1946
Score = 170 bits (188), Expect = 3e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 1362 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1303
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| |||
Sbjct 1302 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 1243
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || || || || ||||| || || || || ||||| | || ||||||
Sbjct 1242 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 1183
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090
| || |||||||| || || ||||| || || | || || |||||||
Sbjct 1182 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGCCTGCGCGGTGGTG 1134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657826562945760
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