Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1890 118 3e-21 seq2185 86.0 2e-11 >seq1890 Length=79273 Score = 118 bits (130), Expect = 3e-21 Identities = 185/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||||||| | || || ||||| ||||| || | Sbjct 63974 CTTGACCAGACGACGCTGGATGTAACCAGTTTCGGCGGTCTTGACAGCAGTATCGATCAA 63915 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | | |||| |||| ||||||||||| | || || ||| || || | | Sbjct 63914 ACCCTCTCTACCAGCCATGGCATGGAAGAAGAATTCACTAGG-CGTGAGACCACGGAGGT 63856 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| |||| ||||| || || || || || || | |||| |||||| || || || | Sbjct 63855 ATGAGTTCTCGACGAAGCCGCGAGCTTCAGGGGAGTAGTCGTCCTTGGTGAAATGCGGGA 63796 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | || || ||||| | ||||||||||| || || ||| |||||||||| | | Sbjct 63795 GAGTGCGGTACTTGAAGCCGAAGGGGATACGCTTGCCCTCGACGATCTGCTGTCCGACGA 63736 Query 302822 ACGAAATCATCTGCGAAATATT 302843 | | ||||||| ||||| || Sbjct 63735 GAGCAGTCATCTGGGAAATGTT 63714 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| ||| || | ||||||||| Sbjct 64765 AGAATTTCCTTGAGACGAGGCACACCAAGCGTGACGTT---CTTAGAAGAAACACCAGCG 64709 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| ||||| || | || |||| ||||||||||| || |||||||| Sbjct 64708 AAATGGAAAGTGTTCAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCCGCAATG 64649 Query 301933 ATACCAACCATTTCTCCTGG 301952 | || ||||| || || || Sbjct 64648 ACGCCCACCATCTCACCCGG 64629 >seq2185 Length=109607 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | |||||| ||||||||||||||||| ||||||||||||||||| || || Sbjct 94838 GCACCATGAGCAATCATGCAATCACGCTCCATTTCTCCGAAACGAAGACCACCGTCACGT 94779 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | |||||| | ||||| Sbjct 94778 GCACGACCCTCAACTGGCTG 94759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471735418304646