Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1890 118 3e-21
seq2185 86.0 2e-11
>seq1890
Length=79273
Score = 118 bits (130), Expect = 3e-21
Identities = 185/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||||||| | || || ||||| ||||| || |
Sbjct 63974 CTTGACCAGACGACGCTGGATGTAACCAGTTTCGGCGGTCTTGACAGCAGTATCGATCAA 63915
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | | |||| |||| ||||||||||| | || || ||| || || | |
Sbjct 63914 ACCCTCTCTACCAGCCATGGCATGGAAGAAGAATTCACTAGG-CGTGAGACCACGGAGGT 63856
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| |||| ||||| || || || || || || | |||| |||||| || || || |
Sbjct 63855 ATGAGTTCTCGACGAAGCCGCGAGCTTCAGGGGAGTAGTCGTCCTTGGTGAAATGCGGGA 63796
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | || || ||||| | ||||||||||| || || ||| |||||||||| | |
Sbjct 63795 GAGTGCGGTACTTGAAGCCGAAGGGGATACGCTTGCCCTCGACGATCTGCTGTCCGACGA 63736
Query 302822 ACGAAATCATCTGCGAAATATT 302843
| | ||||||| ||||| ||
Sbjct 63735 GAGCAGTCATCTGGGAAATGTT 63714
Score = 84.2 bits (92), Expect = 6e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| ||| || | |||||||||
Sbjct 64765 AGAATTTCCTTGAGACGAGGCACACCAAGCGTGACGTT---CTTAGAAGAAACACCAGCG 64709
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||| ||||| || | || |||| ||||||||||| || ||||||||
Sbjct 64708 AAATGGAAAGTGTTCAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCCGCAATG 64649
Query 301933 ATACCAACCATTTCTCCTGG 301952
| || ||||| || || ||
Sbjct 64648 ACGCCCACCATCTCACCCGG 64629
>seq2185
Length=109607
Score = 86.0 bits (94), Expect = 2e-11
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
||||| || | |||||| ||||||||||||||||| ||||||||||||||||| || ||
Sbjct 94838 GCACCATGAGCAATCATGCAATCACGCTCCATTTCTCCGAAACGAAGACCACCGTCACGT 94779
Query 251545 GCCCTACCCTCGGCAGGCTG 251564
|| | |||||| | |||||
Sbjct 94778 GCACGACCCTCAACTGGCTG 94759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471735418304646
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |