Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4149 230 3e-54 seq245 194 2e-43 seq2805 147 3e-29 seq3337 125 9e-23 seq3509 114 2e-19 seq274 100 3e-15 seq2620 96.9 4e-14 >seq4149 Length=3614 Score = 230 bits (254), Expect = 3e-54 Identities = 284/389 (73%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| | Sbjct 1239 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 1298 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||||||||||||||||| ||| || | || ||||| || |||||| || | | Sbjct 1299 CTCACCGAGGCCGACATCCAGCCCCAGCTGAACCGTCGCCGCCCCGGCCAGAGCTCCATC 1358 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||| || ||||| || || ||| |||||||| ||||| ||| |||| || Sbjct 1359 ACGACGCCCCGGAACGAAAAGGACCGAGTCGTCATCCAGAGCGGCACCGAGTTCGGCGTC 1418 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337 || |||||| | || ||||| | | || ||| |||||||| ||| |||| Sbjct 1419 ACCCTCGGCACCCCGATCGGCATGCTGGTCCAGAACGAGGACCAGCGCCCCAGGGACTAC 1478 Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | ||| |||| || | || || ||||| |||||||||| |||||| | | Sbjct 1479 GGCAACTCCACCATGGACATGTATCCCCGCCCCTCCCACGCCGACTGGACCTACCTCGAG 1538 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||||||| ||||||| || |||||||| ||||| || || |||||||||||| || Sbjct 1539 AAGTACGGCGTCAAGGCCTCCTCGGGCGGCGGCCGCTCCTCCGCCCGCGAGACCATCGCC 1598 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || |||||||||||||| |||||||||| Sbjct 1599 CGTGTCGCCGCCGGCGCCCTCGCCGAGAA 1627 Score = 138 bits (152), Expect = 1e-26 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 |||||||||||||||||||| || || ||||| |||||| ||| | | ||||||| Sbjct 1860 GAGGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAACCCGCCCTCGGCCCTCGGC 1919 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| ||| |||||||||||||| ||||| ||| Sbjct 1920 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTTGCCCACGCCATGCTCAGCATCCCCGCC 1979 Query 19164 ACCAAGGGATTCGAGATTGGC 19184 |||||||| |||||||| ||| Sbjct 1980 ACCAAGGGCTTCGAGATCGGC 2000 >seq245 Length=98725 Score = 194 bits (214), Expect = 2e-43 Identities = 338/492 (69%), Gaps = 15/492 (3%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| || |||| ||| ||||| ||||||||||| |||| |||||| Sbjct 89651 GCCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTT 89592 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || |||||||||||| || | ||| | ||||| ||||| | ||| || | Sbjct 89591 AGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAG 89532 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || ||||| || ||| ||||||||| | || || ||||| ||||||||||| || Sbjct 89531 ACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGATACC 89472 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| ||||| ||||||| || || || || || || || |||| || | || Sbjct 89471 CTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGGGGT 89412 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||||||||||| ||||| | || |||||| |||| | |||||| || ||| Sbjct 89411 ACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTCGACATCAGGTTGTA 89352 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| ||| |||||| || |||| | | |||| | | |||| || Sbjct 89351 GGTCTCGATAACGCGC------------TCAACGTTGTC-GCCCCAGATT--CCGACAGC 89307 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 || ||||||| ||||| |||||| | |||| | | |||| | ||| ||||| Sbjct 89306 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA 89247 Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGAT 1630541 || | || |||| ||| ||| ||||| || || |||||||||| | ||| Sbjct 89246 AGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGAT 89187 Query 1630542 GGCGGCGTCGAG 1630553 ||| | ||| || Sbjct 89186 GGCAGAGTCAAG 89175 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 ||||| || ||||| || |||| || || || |||||||||| ||| || ||| ||| Sbjct 90316 TCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 90257 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 || | |||||||||||||||| ||||| | | ||||||||||| || ||||||||| Sbjct 90256 TCCTGGACCGGGTAGTGGTTGACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTGG 90197 Query 1627990 ACGATCTCGTGCAG 1628003 || |||||| || Sbjct 90196 GTGACCTCGTGAAG 90183 >seq2805 Length=16810 Score = 147 bits (162), Expect = 3e-29 Identities = 98/109 (90%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||||||||||||||||||||| ||||| |||| |||||| | || |||||| Sbjct 12160 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGTTGCAAGACCGTTGCCAAC 12219 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 12220 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACGTTCAACATCA 12268 >seq3337 Length=46210 Score = 125 bits (138), Expect = 9e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| | || ||||| Sbjct 4091 GCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 4150 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||||||| || |||| | Sbjct 4151 TTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAAGCGCAACA 4210 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || |||||||| || ||||| |||||||| ||| ||| || ||||||||||| Sbjct 4211 AGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGC 4270 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| ||| ||||| | ||| |||| ||| || ||||| ||| Sbjct 4271 AGGGCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATG 4330 Query 868931 AT 868932 || Sbjct 4331 AT 4332 Score = 105 bits (116), Expect = 8e-17 Identities = 144/197 (73%), Gaps = 13/197 (7%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| |||| || || |||||||| || ||||| Sbjct 4405 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGCATGAGACCACGCTT 4464 Query 869239 CTTGAGCCAAAAGATG---GCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 869295 ||||||||| |||||| ||| || || | | | || ||||||||||||||||| || Sbjct 4465 CTTGAGCCAGAAGATGGATGCGAAGGCAC--CACTA-AAGAAGATGCCCTCGACGGCAGC 4521 Query 869296 AAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATC 869353 |||| | | || |||| ||| ||| |||| | ||| | | | |||||||| | Sbjct 4522 AAAGGCAACCAGGCGCTGGGCGAAG-----GAGGACTTCTCATCGCTAATCCACTTGAGG 4576 Query 869354 GCCCAGTCGGCCTTTTT 869370 |||||||||||||| || Sbjct 4577 GCCCAGTCGGCCTTCTT 4593 >seq3509 Length=13417 Score = 114 bits (126), Expect = 2e-19 Identities = 254/372 (68%), Gaps = 18/372 (5%) Strand=Plus/Minus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || |||| | | | |||||||| |||||||||| Sbjct 11367 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTACCGTTCTTGA 11309 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| |||||| |||| Sbjct 11308 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 11249 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGA 1726867 | ||||| | |||||| | | | ||| || || | |||| ||| || Sbjct 11248 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCGAGGAACTGCGGGG-----AGATGGT 11194 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926 | ||| | ||| ||| | |||| || | ||||| || || ||||| || || | Sbjct 11193 GTCGAGCATCTCACTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 11137 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||| | ||| |||||| || Sbjct 11136 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCAATGTCCGGGTCGTTGAT 11077 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 ||||||||||| |||||||| ||||| ||||| || | ||||||||||||| ||||| Sbjct 11076 GAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCAAGGTAGGCGCGCATGATGACGCA 11017 Query 1727047 AAGCGCGTCGCC 1727058 ||| |||||| Sbjct 11016 AAG---GTCGCC 11008 >seq274 Length=111205 Score = 100 bits (110), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1572388 GCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCGGGCTCGGG 1572447 ||| ||||||||| ||||||| || | || || ||| | ||||| || |||||| Sbjct 87888 GCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGACGATCTCGGG 87947 Query 1572448 TTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTGG-- 1572505 | || || | || | |||||||| ||| ||||||| | | || | | Sbjct 87948 GGTGAAGATGCGCTCCACGACGAGCTGGGCGACGCGG---TCGCCCTCGGCGACCTCGAA 88004 Query 1572506 -TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGAT 1572564 |||||||||| |||||||||||| | ||| ||||||||||| |||||||| ||||| Sbjct 88005 GTCGGCGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCGGCGTCGAT 88064 Query 1572565 GACGCCTGCGCCGACGTCGATG 1572586 |||||| ||||| ||||||| Sbjct 88065 GACGCCGGCGCCAGTGTCGATG 88086 >seq2620 Length=60815 Score = 96.9 bits (106), Expect = 4e-14 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| || || ||||||| ||| |||| | | |||||| | | Sbjct 50338 TCGACGTCGTCCGTAATCGCATCAAGGGTTTTGCCCAGAAGAAGGTGACCCTGCCCCAGG 50279 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | | |||||||||||||||||| || | || || | |||||||| | Sbjct 50278 GTCGCCACAAGCTTGTGATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAG 50219 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 |||| || || ||||| | | ||||||| ||||||||||| | || ||||| Sbjct 50218 CCCTTCGCCGAACGATGGAGATCTATTCCAACACAACGCGCTTTGCTTTCGCCTGCAATC 50159 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCG 1574236 ||| | | |||||||| | || | |||||| |||||||| || || Sbjct 50158 AGTCCAACAAGATCATCGAGCCGCTGC--AGTCGCGATGCGCCATCCTCCG 50110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106781562111486