Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq245 147 3e-29 seq2805 138 2e-26 seq3337 113 7e-19 seq1890 93.3 7e-13 seq274 91.5 2e-12 >seq245 Length=98725 Score = 147 bits (162), Expect = 3e-29 Identities = 336/504 (67%), Gaps = 15/504 (3%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| || |||| ||| ||||| ||||||||||| || | |||||| Sbjct 89651 GCCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTT 89592 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || |||||||||||| || | ||| | ||| | ||||| | ||| || | Sbjct 89591 AGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAG 89532 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || ||||| || ||| ||||||||| | || || | || || || |||||||| || Sbjct 89531 ACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGATACC 89472 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||| ||||| ||||||| || | || || || || || |||| | | || Sbjct 89471 CTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGGGGT 89412 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||||| |||||||| ||||| | || ||| | ||| ||||| | ||| Sbjct 89411 ACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTCGACATCAGGTTGTA 89352 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| ||| |||||| | | ||| |||| |||| | | |||| || Sbjct 89351 GGTCTCGATAACGCGCTCAA---CGT------TGTCG----CCCCAGATT--CCGACAGC 89307 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956 || ||||||||||||| |||||||| |||| | | | || | ||| ||||| Sbjct 89306 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA 89247 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || | || |||| | ||| ||||| |||| | |||||| |||| | ||| Sbjct 89246 AGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGAT 89187 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | ||| || |||||||||| Sbjct 89186 GGCAGAGTCAAGCTCCTCCTTGTG 89163 Score = 91.5 bits (100), Expect = 2e-12 Identities = 165/242 (68%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 2070008 GATAGGGTCCCTCCTTTGCGGCCAGTTGTGCCGACGCCGTCGCCGCCGCATGGTAGATCG 2070067 ||||||| ||||||| ||||| || ||||| || || || |||||||| | Sbjct 90447 GATAGGGGCCCTCCTCCTTGGCCAACTGAACCGACATGGTAAGGGCAGCGTGGTAGATTG 90388 Query 2070068 TCTCAAAGATGGTGCGGTTGAGGCGACGCGCGCCGGCGCTCTCCCACGGCA------GGT 2070121 |||| ||||| | ||||||| ||| || ||| | ||| | |||| || Sbjct 90387 TCTCGAAGATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCGAAGGGCATGCGGAGGG 90328 Query 2070122 CCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCA 2070181 ||| | |||| ||||| || ||||| || |||| || || || |||||||||| Sbjct 90327 CCAAGAAGGCA------TCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCA 90274 Query 2070182 GGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGT 2070241 ||| || || ||||| | |||||||||||||||| ||||| | | |||||||| Sbjct 90273 TGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACATCGATGATTCTGTTGAGGT 90214 Query 2070242 TG 2070243 || Sbjct 90213 TG 90212 >seq2805 Length=16810 Score = 138 bits (152), Expect = 2e-26 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||| |||||||| | || ||||||||||| |||||| Sbjct 12160 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGTTGCAAGACCGTTGCCAAC 12219 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 12220 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACGTTCAACATCA 12268 >seq3337 Length=46210 Score = 113 bits (124), Expect = 7e-19 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| |||||| |||||||||||||| | | Sbjct 4083 TGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 4142 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | | |||| ||| ||| || | Sbjct 4143 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAA 4202 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 ||| |||| || |||||||| ||||| ||||||||||| ||| ||| || ||||| Sbjct 4203 GCGCAACAAGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCA 4262 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || || || | ||| | | ||||| | ||| |||| ||| || | Sbjct 4263 TGCCGAGCAGGGCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCAT 4322 Query 794131 CGATGATGAT 794140 ||| ||||| Sbjct 4323 CGACAATGAT 4332 Score = 104 bits (114), Expect = 4e-16 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 |||||||||||| || |||| || | || | |||| ||||||| |||||||||||| Sbjct 4673 GTGTCGATGGCGTTGAAAAGGTACGTGC-GCTGGGCCGGCTCCTTGATGTAGGTGTCGAT 4731 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| |||||||||||||| || |||||||| || || |||||||||||||| || || Sbjct 4732 GAGCAGCGAGTAGGTCTCGGAATGGATGTTCTCCATCATAATCTGGAAGCCATAGAAACA 4791 Query 794667 G 794667 | Sbjct 4792 G 4792 Score = 91.5 bits (100), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| || || |||||||| || ||||| Sbjct 4405 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGCATGAGACCACGCTT 4464 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| || || ||||||||||||||||| ||||| Sbjct 4465 CTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCCCTCGACGGCAGCAAA 4524 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517 | | || || |||| ||| || | ||| | ||| | | | |||||||| | ||| Sbjct 4525 GGCAACCAGGCGCTGGGCGAAGG-----AGGACTTCTCATCGCTAATCCACTTGAGGGCC 4579 Query 794518 CACTCTGCCTTTTT 794531 || || ||||| || Sbjct 4580 CAGTCGGCCTTCTT 4593 >seq1890 Length=79273 Score = 93.3 bits (102), Expect = 7e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567 ||||| || ||| |||| |||||||| || || |||||| || | | || | | Sbjct 62719 CGCTCGAGTACGGCTGGAAGGTCGAGCGTCATTTGATCACCGGTGATTACATCATCTTCA 62778 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCG 429627 |||| |||||||| || |||| || ||| ||| | |||| || |||||| Sbjct 62779 ACCGTCAGCCGTCCCTTCACAAGGAGTCTATGATGGGTCACAGAGTCCGCGTCATGCCTT 62838 Query 429628 GTCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCG 429687 | || ||||| |||||| || |||| || | ||||||||||| || ||||| | Sbjct 62839 ATTCGACTTTCCGTCTCAACTTGTCCGTCACCTCGCCATACAACGCCGATTTCGACGGTG 62898 Query 429688 ACGAGATGAACCTGCACGTGCCCCAG 429713 |||||||||| || ||||| |||||| Sbjct 62899 ACGAGATGAATCTTCACGTCCCCCAG 62924 >seq274 Length=111205 Score = 91.5 bits (100), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 2017463 GCCCGTCGAGCCAAAGCCGCCGGCACCGCGCTCGGTCTCGTCCAACGAATCGACCCACGC 2017522 |||||| ||| ||||||||||| |||||| || |||| || | | ||||| | Sbjct 87879 GCCCGTGCTGCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGAC 87938 Query 2017523 GGGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCCCAC 2017582 | |||||| | || || | || | |||||||| || |||| || | || Sbjct 87939 GATCTCGGGGGTGAAGATGCGCTCCACGACGAGCTGGGCGACGCGGTCGCCCTCGGCGAC 87998 Query 2017583 GACGTGATCGGCGTCGGTATGGTTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCGGC 2017642 || |||||||||| ||||| ||||| | ||| |||||||| || |||||||| Sbjct 87999 CTCGAAGTCGGCGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCGGC 88058 Query 2017643 ATCGATGACGCCGGCGCCGACGTCGATG 2017670 ||||||||||||||||| ||||||| Sbjct 88059 GTCGATGACGCCGGCGCCAGTGTCGATG 88086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915782819663162