Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq245 147 3e-29
seq2805 138 2e-26
seq3337 113 7e-19
seq1890 93.3 7e-13
seq274 91.5 2e-12
>seq245
Length=98725
Score = 147 bits (162), Expect = 3e-29
Identities = 336/504 (67%), Gaps = 15/504 (3%)
Strand=Plus/Minus
Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596
|| ||||||||| ||||| || |||| ||| ||||| ||||||||||| || | ||||||
Sbjct 89651 GCCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTT 89592
Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656
|| |||||||||||| || | ||| | ||| | ||||| | ||| || |
Sbjct 89591 AGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAG 89532
Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716
|| ||||| || ||| ||||||||| | || || | || || || |||||||| ||
Sbjct 89531 ACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGATACC 89472
Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776
|||||| ||||| ||||||| || | || || || || || |||| | | ||
Sbjct 89471 CTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGGGGT 89412
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836
||||| |||||||| ||||| | || ||| | ||| ||||| | |||
Sbjct 89411 ACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTCGACATCAGGTTGTA 89352
Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896
||| ||| |||||| | | ||| |||| |||| | | |||| ||
Sbjct 89351 GGTCTCGATAACGCGCTCAA---CGT------TGTCG----CCCCAGATT--CCGACAGC 89307
Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956
|| ||||||||||||| |||||||| |||| | | | || | ||| |||||
Sbjct 89306 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA 89247
Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016
|| | || |||| | ||| ||||| |||| | |||||| |||| | |||
Sbjct 89246 AGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGAT 89187
Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040
||| | ||| || ||||||||||
Sbjct 89186 GGCAGAGTCAAGCTCCTCCTTGTG 89163
Score = 91.5 bits (100), Expect = 2e-12
Identities = 165/242 (68%), Gaps = 12/242 (5%)
Strand=Plus/Minus
Query 2070008 GATAGGGTCCCTCCTTTGCGGCCAGTTGTGCCGACGCCGTCGCCGCCGCATGGTAGATCG 2070067
||||||| ||||||| ||||| || ||||| || || || |||||||| |
Sbjct 90447 GATAGGGGCCCTCCTCCTTGGCCAACTGAACCGACATGGTAAGGGCAGCGTGGTAGATTG 90388
Query 2070068 TCTCAAAGATGGTGCGGTTGAGGCGACGCGCGCCGGCGCTCTCCCACGGCA------GGT 2070121
|||| ||||| | ||||||| ||| || ||| | ||| | |||| ||
Sbjct 90387 TCTCGAAGATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCGAAGGGCATGCGGAGGG 90328
Query 2070122 CCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCA 2070181
||| | |||| ||||| || ||||| || |||| || || || ||||||||||
Sbjct 90327 CCAAGAAGGCA------TCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCA 90274
Query 2070182 GGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGT 2070241
||| || || ||||| | |||||||||||||||| ||||| | | ||||||||
Sbjct 90273 TGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACATCGATGATTCTGTTGAGGT 90214
Query 2070242 TG 2070243
||
Sbjct 90213 TG 90212
>seq2805
Length=16810
Score = 138 bits (152), Expect = 2e-26
Identities = 96/109 (88%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||||||||||||||| |||||||| | || ||||||||||| ||||||
Sbjct 12160 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGTTGCAAGACCGTTGCCAAC 12219
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 12220 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACGTTCAACATCA 12268
>seq3337
Length=46210
Score = 113 bits (124), Expect = 7e-19
Identities = 175/250 (70%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | || ||| |||||| |||||||||||||| | |
Sbjct 4083 TGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 4142
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| ||||||| | | |||| ||| ||| || |
Sbjct 4143 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAA 4202
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
||| |||| || |||||||| ||||| ||||||||||| ||| ||| || |||||
Sbjct 4203 GCGCAACAAGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCA 4262
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| || || || || | ||| | | ||||| | ||| |||| ||| || |
Sbjct 4263 TGCCGAGCAGGGCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCAT 4322
Query 794131 CGATGATGAT 794140
||| |||||
Sbjct 4323 CGACAATGAT 4332
Score = 104 bits (114), Expect = 4e-16
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
|||||||||||| || |||| || | || | |||| ||||||| ||||||||||||
Sbjct 4673 GTGTCGATGGCGTTGAAAAGGTACGTGC-GCTGGGCCGGCTCCTTGATGTAGGTGTCGAT 4731
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| |||||||||||||| || |||||||| || || |||||||||||||| || ||
Sbjct 4732 GAGCAGCGAGTAGGTCTCGGAATGGATGTTCTCCATCATAATCTGGAAGCCATAGAAACA 4791
Query 794667 G 794667
|
Sbjct 4792 G 4792
Score = 91.5 bits (100), Expect = 2e-12
Identities = 137/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | |||||| ||| || || |||||||| || |||||
Sbjct 4405 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGCATGAGACCACGCTT 4464
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||||| ||| || || ||||||||||||||||| |||||
Sbjct 4465 CTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCCCTCGACGGCAGCAAA 4524
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517
| | || || |||| ||| || | ||| | ||| | | | |||||||| | |||
Sbjct 4525 GGCAACCAGGCGCTGGGCGAAGG-----AGGACTTCTCATCGCTAATCCACTTGAGGGCC 4579
Query 794518 CACTCTGCCTTTTT 794531
|| || ||||| ||
Sbjct 4580 CAGTCGGCCTTCTT 4593
>seq1890
Length=79273
Score = 93.3 bits (102), Expect = 7e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567
||||| || ||| |||| |||||||| || || |||||| || | | || | |
Sbjct 62719 CGCTCGAGTACGGCTGGAAGGTCGAGCGTCATTTGATCACCGGTGATTACATCATCTTCA 62778
Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCG 429627
|||| |||||||| || |||| || ||| ||| | |||| || ||||||
Sbjct 62779 ACCGTCAGCCGTCCCTTCACAAGGAGTCTATGATGGGTCACAGAGTCCGCGTCATGCCTT 62838
Query 429628 GTCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCG 429687
| || ||||| |||||| || |||| || | ||||||||||| || ||||| |
Sbjct 62839 ATTCGACTTTCCGTCTCAACTTGTCCGTCACCTCGCCATACAACGCCGATTTCGACGGTG 62898
Query 429688 ACGAGATGAACCTGCACGTGCCCCAG 429713
|||||||||| || ||||| ||||||
Sbjct 62899 ACGAGATGAATCTTCACGTCCCCCAG 62924
>seq274
Length=111205
Score = 91.5 bits (100), Expect = 2e-12
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 2017463 GCCCGTCGAGCCAAAGCCGCCGGCACCGCGCTCGGTCTCGTCCAACGAATCGACCCACGC 2017522
|||||| ||| ||||||||||| |||||| || |||| || | | ||||| |
Sbjct 87879 GCCCGTGCTGCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGAC 87938
Query 2017523 GGGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCCCAC 2017582
| |||||| | || || | || | |||||||| || |||| || | ||
Sbjct 87939 GATCTCGGGGGTGAAGATGCGCTCCACGACGAGCTGGGCGACGCGGTCGCCCTCGGCGAC 87998
Query 2017583 GACGTGATCGGCGTCGGTATGGTTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCGGC 2017642
|| |||||||||| ||||| ||||| | ||| |||||||| || ||||||||
Sbjct 87999 CTCGAAGTCGGCGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCGGC 88058
Query 2017643 ATCGATGACGCCGGCGCCGACGTCGATG 2017670
||||||||||||||||| |||||||
Sbjct 88059 GTCGATGACGCCGGCGCCAGTGTCGATG 88086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915782819663162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |