Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1916 145 5e-30
seq3617 114 8e-21
seq3878 113 3e-20
>seq1916
Length=1946
Score = 145 bits (160), Expect = 5e-30
Identities = 165/219 (75%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 1151 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 1210
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| |||||||||||||| || |||||||| | || | |||||||||||
Sbjct 1211 TCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1270
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||| || |||| ||| ||
Sbjct 1271 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 1326
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
||||| |||||||||||||| || ||||||||||||||
Sbjct 1327 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 1365
>seq3617
Length=84999
Score = 114 bits (126), Expect = 8e-21
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || ||| |||| |||| || || ||||| ||||||||||
Sbjct 45239 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGA 45298
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || |||||||| | || | ||||||||||| | || || |||||
Sbjct 45299 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45358
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || |
Sbjct 45359 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACGA 45418
Query 34968 A 34968
|
Sbjct 45419 A 45419
>seq3878
Length=33396
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || ||||||||| ||||| || || ||| |||| | ||
Sbjct 29573 AGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 29514
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||||||||||||| ||||| ||||| || |||||||| | || | |||||||||||
Sbjct 29513 TCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCT 29454
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| ||||| |||||| | || | ||| | ||| || || | || || |||
Sbjct 29453 TGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTC 29394
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | |||||| |||||||| |||||
Sbjct 29393 TTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || |||||||| ||||| ||||| || || | || ||||
Sbjct 29345 AGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 29286
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||| |||||||| ||||||||||| | || | |||||||||||
Sbjct 29285 TCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 29226
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | || || |||| || || |||
Sbjct 29225 TGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTC 29166
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || ||||| || |||||||||||
Sbjct 29165 TTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134
Score = 87.8 bits (96), Expect = 1e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 28833 AGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 28774
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||| || || ||||| || | || | |||||||||||
Sbjct 28773 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCC 28714
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| || |||||| |||| || ||||||
Sbjct 28713 TGGATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTC 28654
Query 34946 TTTCCCGT 34953
|| || ||
Sbjct 28653 TTGCCGGT 28646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325675501437602
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |