Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3878 125 1e-23 >seq3878 Length=33396 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || || || || | ||| ||||||||||| ||||| || || || || | Sbjct 29362 TACCTCCGCGCAGGCGAAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGG 29303 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || || |||||||| || | ||| || || |||| Sbjct 29302 ACAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAG 29243 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| | || || || ||||| || || | ||| | Sbjct 29242 GGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAA 29183 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || |||||||| || || | |||||| || || |||||||| Sbjct 29182 CCTCAAGCGTGATCGTCTTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134 Score = 107 bits (118), Expect = 4e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||| ||||| || || || || | Sbjct 29134 TACCACCACGGAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGG 29075 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || ||||||||||| | | ||| || || |||| Sbjct 29074 ACAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAG 29015 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || ||||| || || || || | |||| Sbjct 29014 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTA 28955 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 | || | ||| || |||||||| || | ||||| || Sbjct 28954 CCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 28918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981772377837362