Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq245 304 1e-77
seq1916 138 1e-27
seq3878 111 2e-19
seq3617 107 2e-18
>seq245
Length=98725
Score = 304 bits (336), Expect = 1e-77
Identities = 1135/1755 (65%), Gaps = 57/1755 (3%)
Strand=Plus/Minus
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTT 148108
|||||| |||||| ||||| ||||||||||| || ||||||| ||| | ||||
Sbjct 90908 CGACTGCGACTGGTCGATGAAGGCGCCACGGTCGGCAGCCATTTGCACAACGGTGCGCTG 90849
Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168
|| ||||| | |||||||||||| ||||| | |||||| | |||
Sbjct 90848 GGAG---ATTTCCCAAACAGTCTTGTACAGCGCCTTGACCTCGGTAGGAATGTTGGGGAT 90792
Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228
| ||| | || ||| | |||| || | || ||| |||| | | | |
Sbjct 90791 GTTCTGAATAGAACCGTTCTCGGCAATGATGCGGTTCTTCATAGCGTCAGACCACAAGCC 90732
Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288
| |||| ||||| | | || | | || || || || |||||||| || || ||
Sbjct 90731 CATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGGAACTCGCCAGCAAGGAC 90672
Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348
|| ||| | || | |||| || | ||||| || |||||||||| ||||| |||||
Sbjct 90671 ACGACGCTGGTAAATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTG 90612
Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408
| ||| | || || |||||| ||| || ||||| |||||||| | |||| | | ||
Sbjct 90611 AGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTT 90552
Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468
|| | |||||||| ||||||||||||| ||| ||| | || |||||||||||
Sbjct 90551 GATCTGCTCCTTCAGAGAATCCCAGTCCCAGAGATCCGAGGGTTTGACATTCCACATGTC 90492
Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTG-TACGGTCCGTGCG 148527
|||||| || ||||| | | | ||| ||||| |||| ||| || || || | |
Sbjct 90491 GTACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCATACGT-CTGATAGGGGCCCTCCT 90433
Query 148528 CCGCCGCCAGTTCGCAGCTCGCCTCG--AGCGCGCCGTAGTAAATCGTCTCGGCAATTTG 148585
|| |||| | | | | | | || || ||| ||| || |||||| || |
Sbjct 90432 CCTTGGCCAACTG--AACCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTT 90375
Query 148586 CCTGTTGAG--CA-GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGC 148642
| ||||||| || | || | | | ||| | ||||| || || || || ||
Sbjct 90374 CTTGTTGAGGTCACGAGCTTCGGG---GGACTCGAAGGGCATGCGGAGGGCCAAGAAGGC 90318
Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702
|||||||| ||||| || || | |||||||| ||||| |||||| | ||| ||
Sbjct 90317 ATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC 90258
Query 148703 GCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT 148762
|| || ||| ||||||||| |||||||| ||| || ||||| || || ||||
Sbjct 90257 CTCCTGGACCGGGTAGTGGTTGACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTG 90198
Query 148763 TGTAATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACGATGCATCG 148813
|| | | | ||| | || ||||| |||| || |||| | | |
Sbjct 90197 GGTGACCTCGTGAAGCTTCTGGAAGTCGTAAACACCCTCGTTGTAGTCAACGAAGG-TGG 90139
Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873
| || || | ||||| || |||||||| || |||||| || |||| |||||| |
Sbjct 90138 G--CAGCGCAAGCGAGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAAT 90081
Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933
|||||| | ||| || ||| | ||| |||| |||||| || ||||||||||
Sbjct 90080 GATCTCAGTGCATAGGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCG 90021
Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993
|||| || |||||||| ||||| | || ||||| || || | || | ||
Sbjct 90020 GTTGGCAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGAT 89961
Query 148994 GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTC------CTGCTC 149047
| | ||| | | | || ||| | || | |||||| | ||||||
Sbjct 89960 GG--CATACCAGAGCTTTTGGGC---CTTTAGGGTCTT-GCGACCTTTGCCCATCTGCTC 89907
Query 149048 GTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT 149107
||| ||||| |||||| ||||||||||||| ||| ||||||| |||||||
Sbjct 89906 GTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTC 89847
Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167
|| ||||||||||| | ||| |||||| | | ||| | |||||| || ||||||||
Sbjct 89846 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGG 89787
Query 149168 CACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC--GCCCAT-GTTGCG 149224
| |||||| ||| | ||||| || || || | | || | ||||| |||
Sbjct 89786 GATCCAGAGGGCGAGAAATAGGTCACGAGC---GCGGACCTCCTCCTTCCCATGGTTCTT 89730
Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284
|||||| | | | | |||| || |||||||| ||||| | ||| | || | ||
Sbjct 89729 GCGCAGATCCAAGAAGTCAAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGC 89670
Query 149285 GCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341
|| ||||||| |||||||||||||||| ||| | ||||||| || || || |
Sbjct 89669 ACCGGGGCGCTTGTTTCCGCCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAG 89610
Query 149342 CATAGGTTCAATGCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTC 149400
||| || | | ||| | | |||||||| || ||| |||| | |||| || |
Sbjct 89609 CATGGGAACGACGCCGTTAGAGGTGCCGTTGGTGCCAGC-AATGTAAGAGCCGGTAGCGC 89551
Query 149401 GCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCG 149459
| | ||| ||||||| || ||||| || ||| | ||| ||||| || |||
Sbjct 89550 GGATGCGGTGGACGTTGAGACCAATGCCACCAGCCAT-CTTGGAGATCATAGCACAGGTC 89492
Query 149460 CCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAG 149519
||| || |||||| |||||||| ||| |||||| | || || || |||
Sbjct 89491 TTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAG 89432
Query 149520 CACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATA 149578
||| |||| | || ||||| ||| | ||||| |||||| || || |
Sbjct 89431 GACAGCTGCGCCTGGGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAAC 89372
Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638
|| || | ||||| | ||| | ||||| ||||| || | || ||||| ||| ||
Sbjct 89371 TTGCTCG-ACATCAGGTTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCC 89313
Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698
| || || ||||| | ||| ||||| |||| ||| || | ||| ||| || ||
Sbjct 89312 GACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAG 89253
Query 149699 CAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTG 149758
| ||| | || | |||||| |||| ||||| | ||||| ||||||||| |||
Sbjct 89252 GAGGTAAGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTA 89193
Query 149759 GTCAATGGCGGCGTC 149773
| | ||||| | |||
Sbjct 89192 GACGATGGCAGAGTC 89178
>seq1916
Length=1946
Score = 138 bits (152), Expect = 1e-27
Identities = 150/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| || ||| ||||||||||||||| ||
Sbjct 1165 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCC 1224
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 1225 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 1284
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || ||||| || || ||
Sbjct 1285 GACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 1344
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 1345 CTTGACGAAGATCTGCATG 1363
>seq3878
Length=33396
Score = 111 bits (122), Expect = 2e-19
Identities = 139/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| || ||||| ||| || || | | | |||||||||||||||||
Sbjct 29102 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCA-TCCTCGAGCTGCTTGCC 29044
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || | || |||||||||||||||||||| |||||||| |||||| |||
Sbjct 29043 AGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 28984
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| || ||| || |||| |||| ||| ||||| || |||||
Sbjct 28983 GACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTCTTGCCAGTGAGAGT 28924
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 28923 CTTGACGA 28916
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| || ||||| ||| || || | | | |||||||||||||||||
Sbjct 29330 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCA-TCCTCGAGCTGCTTGCC 29272
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || || |||||||||||||||||||| |||||||| ||||| |||
Sbjct 29271 GGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTT 29212
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| ||||| | | || || || | |||| || || || || || ||
Sbjct 29211 GACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTCTTTCCAGTAAGCGT 29152
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 29151 CTTGACGAAGATCTGCAT 29134
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || |||||||||| || ||| ||| |||||| || ||||| ||
Sbjct 29558 GTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC-GTCCTCCAGTTGCTTTCC 29500
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| || ||||||||||| || ||||| || |||||||| ||| || |||
Sbjct 29499 AGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTGGACTT 29440
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | | ||| || || | || | || || ||||||| ||
Sbjct 29439 GACGTTGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTCTTTCCGGTCAAGGT 29380
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || || |||||
Sbjct 29379 CTTGACAAAGATTTGCAT 29362
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| ||| | ||| |||||| |||||||||||
Sbjct 28818 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 28759
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || || |||||||| ||||||||||| || |||||||| |||||| |||
Sbjct 28758 GCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTC 28699
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
| | || | || || | || ||| || || | |||| ||| ||||||||
Sbjct 28698 ACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 28646
>seq3617
Length=84999
Score = 107 bits (118), Expect = 2e-18
Identities = 134/181 (74%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531
||||| || ||||| ||| || ||| | | | ||||| ||||||||||| ||| | ||
Sbjct 45241 TTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGAT 45299
Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591
| ||||||||||| || |||||||| |||||||| |||||| ||||| | ||
Sbjct 45300 CAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTC 45359
Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651
| |||||| | || ||| || || | ||| | ||| ||||| ||||| || || |||||
Sbjct 45360 GATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACGAA 45419
Query 133652 A 133652
|
Sbjct 45420 A 45420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483394465651920
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