Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq245 304 1e-77 seq1916 138 1e-27 seq3878 111 2e-19 seq3617 107 2e-18 >seq245 Length=98725 Score = 304 bits (336), Expect = 1e-77 Identities = 1135/1755 (65%), Gaps = 57/1755 (3%) Strand=Plus/Minus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTT 148108 |||||| |||||| ||||| ||||||||||| || ||||||| ||| | |||| Sbjct 90908 CGACTGCGACTGGTCGATGAAGGCGCCACGGTCGGCAGCCATTTGCACAACGGTGCGCTG 90849 Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 || ||||| | |||||||||||| ||||| | |||||| | ||| Sbjct 90848 GGAG---ATTTCCCAAACAGTCTTGTACAGCGCCTTGACCTCGGTAGGAATGTTGGGGAT 90792 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 | ||| | || ||| | |||| || | || ||| |||| | | | | Sbjct 90791 GTTCTGAATAGAACCGTTCTCGGCAATGATGCGGTTCTTCATAGCGTCAGACCACAAGCC 90732 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 | |||| ||||| | | || | | || || || || |||||||| || || || Sbjct 90731 CATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGGAACTCGCCAGCAAGGAC 90672 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || ||| | || | |||| || | ||||| || |||||||||| ||||| ||||| Sbjct 90671 ACGACGCTGGTAAATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTG 90612 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | ||| | || || |||||| ||| || ||||| |||||||| | |||| | | || Sbjct 90611 AGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTT 90552 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468 || | |||||||| ||||||||||||| ||| ||| | || ||||||||||| Sbjct 90551 GATCTGCTCCTTCAGAGAATCCCAGTCCCAGAGATCCGAGGGTTTGACATTCCACATGTC 90492 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTG-TACGGTCCGTGCG 148527 |||||| || ||||| | | | ||| ||||| |||| ||| || || || | | Sbjct 90491 GTACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCATACGT-CTGATAGGGGCCCTCCT 90433 Query 148528 CCGCCGCCAGTTCGCAGCTCGCCTCG--AGCGCGCCGTAGTAAATCGTCTCGGCAATTTG 148585 || |||| | | | | | | || || ||| ||| || |||||| || | Sbjct 90432 CCTTGGCCAACTG--AACCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTT 90375 Query 148586 CCTGTTGAG--CA-GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGC 148642 | ||||||| || | || | | | ||| | ||||| || || || || || Sbjct 90374 CTTGTTGAGGTCACGAGCTTCGGG---GGACTCGAAGGGCATGCGGAGGGCCAAGAAGGC 90318 Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702 |||||||| ||||| || || | |||||||| ||||| |||||| | ||| || Sbjct 90317 ATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC 90258 Query 148703 GCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT 148762 || || ||| ||||||||| |||||||| ||| || ||||| || || |||| Sbjct 90257 CTCCTGGACCGGGTAGTGGTTGACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTG 90198 Query 148763 TGTAATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACGATGCATCG 148813 || | | | ||| | || ||||| |||| || |||| | | | Sbjct 90197 GGTGACCTCGTGAAGCTTCTGGAAGTCGTAAACACCCTCGTTGTAGTCAACGAAGG-TGG 90139 Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 | || || | ||||| || |||||||| || |||||| || |||| |||||| | Sbjct 90138 G--CAGCGCAAGCGAGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAAT 90081 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 |||||| | ||| || ||| | ||| |||| |||||| || |||||||||| Sbjct 90080 GATCTCAGTGCATAGGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCG 90021 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 |||| || |||||||| ||||| | || ||||| || || | || | || Sbjct 90020 GTTGGCAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGAT 89961 Query 148994 GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTC------CTGCTC 149047 | | ||| | | | || ||| | || | |||||| | |||||| Sbjct 89960 GG--CATACCAGAGCTTTTGGGC---CTTTAGGGTCTT-GCGACCTTTGCCCATCTGCTC 89907 Query 149048 GTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT 149107 ||| ||||| |||||| ||||||||||||| ||| ||||||| ||||||| Sbjct 89906 GTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTC 89847 Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167 || ||||||||||| | ||| |||||| | | ||| | |||||| || |||||||| Sbjct 89846 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGG 89787 Query 149168 CACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC--GCCCAT-GTTGCG 149224 | |||||| ||| | ||||| || || || | | || | ||||| ||| Sbjct 89786 GATCCAGAGGGCGAGAAATAGGTCACGAGC---GCGGACCTCCTCCTTCCCATGGTTCTT 89730 Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284 |||||| | | | | |||| || |||||||| ||||| | ||| | || | || Sbjct 89729 GCGCAGATCCAAGAAGTCAAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGC 89670 Query 149285 GCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341 || ||||||| |||||||||||||||| ||| | ||||||| || || || | Sbjct 89669 ACCGGGGCGCTTGTTTCCGCCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAG 89610 Query 149342 CATAGGTTCAATGCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTC 149400 ||| || | | ||| | | |||||||| || ||| |||| | |||| || | Sbjct 89609 CATGGGAACGACGCCGTTAGAGGTGCCGTTGGTGCCAGC-AATGTAAGAGCCGGTAGCGC 89551 Query 149401 GCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCG 149459 | | ||| ||||||| || ||||| || ||| | ||| ||||| || ||| Sbjct 89550 GGATGCGGTGGACGTTGAGACCAATGCCACCAGCCAT-CTTGGAGATCATAGCACAGGTC 89492 Query 149460 CCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAG 149519 ||| || |||||| |||||||| ||| |||||| | || || || ||| Sbjct 89491 TTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAG 89432 Query 149520 CACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATA 149578 ||| |||| | || ||||| ||| | ||||| |||||| || || | Sbjct 89431 GACAGCTGCGCCTGGGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAAC 89372 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 || || | ||||| | ||| | ||||| ||||| || | || ||||| ||| || Sbjct 89371 TTGCTCG-ACATCAGGTTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCC 89313 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698 | || || ||||| | ||| ||||| |||| ||| || | ||| ||| || || Sbjct 89312 GACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAG 89253 Query 149699 CAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTG 149758 | ||| | || | |||||| |||| ||||| | ||||| ||||||||| ||| Sbjct 89252 GAGGTAAGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTA 89193 Query 149759 GTCAATGGCGGCGTC 149773 | | ||||| | ||| Sbjct 89192 GACGATGGCAGAGTC 89178 >seq1916 Length=1946 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| ||||||||||||||| || Sbjct 1165 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCC 1224 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 1225 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 1284 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || ||||| || || || Sbjct 1285 GACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 1344 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1345 CTTGACGAAGATCTGCATG 1363 >seq3878 Length=33396 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| ||| || || | | | ||||||||||||||||| Sbjct 29102 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCA-TCCTCGAGCTGCTTGCC 29044 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||||||||||||||| |||||||| |||||| ||| Sbjct 29043 AGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 28984 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| || ||| || |||| |||| ||| ||||| || ||||| Sbjct 28983 GACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTCTTGCCAGTGAGAGT 28924 Query 133643 TTTTACGA 133650 || |||| Sbjct 28923 CTTGACGA 28916 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| ||| || || | | | ||||||||||||||||| Sbjct 29330 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCA-TCCTCGAGCTGCTTGCC 29272 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || || |||||||||||||||||||| |||||||| ||||| ||| Sbjct 29271 GGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTT 29212 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | || || || | |||| || || || || || || Sbjct 29211 GACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTCTTTCCAGTAAGCGT 29152 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 29151 CTTGACGAAGATCTGCAT 29134 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||||| || ||| ||| |||||| || ||||| || Sbjct 29558 GTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC-GTCCTCCAGTTGCTTTCC 29500 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||| || ||||| || |||||||| ||| || ||| Sbjct 29499 AGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTGGACTT 29440 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | || | || || ||||||| || Sbjct 29439 GACGTTGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTCTTTCCGGTCAAGGT 29380 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 29379 CTTGACAAAGATTTGCAT 29362 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| | ||| |||||| ||||||||||| Sbjct 28818 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 28759 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||| ||||||||||| || |||||||| |||||| ||| Sbjct 28758 GCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTC 28699 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | | || | || || | || ||| || || | |||| ||| |||||||| Sbjct 28698 ACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 28646 >seq3617 Length=84999 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || ||| | | | ||||| ||||||||||| ||| | || Sbjct 45241 TTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGAT 45299 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || |||||||| |||||||| |||||| ||||| | || Sbjct 45300 CAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTC 45359 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||| | || ||| || || | ||| | ||| ||||| ||||| || || ||||| Sbjct 45360 GATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACGAA 45419 Query 133652 A 133652 | Sbjct 45420 A 45420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483394465651920