Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq245 102 8e-17 >seq245 Length=98725 Score = 102 bits (112), Expect = 8e-17 Identities = 958/1542 (62%), Gaps = 53/1542 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| ||||| |||||||| || || ||||| | | || | ||| ||| |||| Sbjct 90700 TTGACGACTTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTGGAGGTGTAAGGT 90641 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || || || || || || | ||| | || || |||||| ||| || Sbjct 90640 TCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACG 90581 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | ||||| | ||| | ||||||| || | ||||||||| Sbjct 90580 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAATCCCAGTCCCAG 90521 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | |||||| | || |||||||||||||||||||| | || || | || Sbjct 90520 AGATCCGAGGGTTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 90461 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCA--CAGCTTGCCTCGAGCG 147190 || | |||| ||| || || || ||||| | | | | || || | Sbjct 90460 CCCTCATACGTCTGATAGGGGCCCTCCTCCTTGGCCAACTGAACCGACATG--GTAAGGG 90403 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | | | ||| || || ||| ||| | ||||| ||| | ||||| | |||| Sbjct 90402 CAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCGA 90343 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 | ||||| || || || ||||||||||| | |||||| | ||||| || || || | Sbjct 90342 AGGGCATGCGGAGGGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGC 90283 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAAT 147368 | || |||||| | | || || || | || ||||||||| ||| || || Sbjct 90282 GGTGGCGCATGTTGCT--GTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACATCGATGAT 90225 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||||||| || || || || | || | | || |||| ||| || ||| Sbjct 90224 TCTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCGTAAAC 90165 Query 147429 CCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGT 147488 || || | | ||| | | || || | || ||||| ||||| || || Sbjct 90164 ACCCTCGTTGTAGTCAACGAAGGTGGGCAGCGCAAGCGAGGCCAGGTTGCACACTGCGAC 90105 Query 147489 CTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCC 147548 ||| || | ||| ||||| | ||| || | ||| |||||| | ||| || Sbjct 90104 CTCATCAGGAGCGCAGTACTCAATGATCTCAGTGCATAGGTTGGAGTTACGGATGGTACC 90045 Query 147549 CAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCC 147608 || || | ||| ||||| || || ||| || || ||| ||||||| | || || Sbjct 90044 CAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATAAAGGGGTTACC 89985 Query 147609 GGTCTCGACTTGCGTTTCAACGAT---AAACCTATGC---AGGTCCT----GCGCTCGCA 147658 |||||| ||| | || | ||| | ||| || || ||| | || || Sbjct 89984 AGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTTAGGGTCTTGCG 89925 Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 || |||| || | || |||||| |||||||| ||| || || |||| Sbjct 89924 ACCTTTGCCCAT--CTGC--------TCGTACTTCTCGTACAGGGCCTCGAATTCCTCGC 89875 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778 ||||||| ||||| || || || |||| | || ||||| || | ||| | ||| | Sbjct 89874 CGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCT 89815 Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT 147838 | || | ||| || ||||| || | ||| || ||| | || || || || Sbjct 89814 TCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGCGAGAAATAGGTCACGAGCGC 89755 Query 147839 TGCAATCCTCGGCGCCCATG----TTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCG 147894 | ||||| |||||| ||||| || || | | | | | | || ||| Sbjct 89754 GGACCTCCTC-CTTCCCATGGTTCTTGCG---CAGATCCAAGAAGTCAAATACATCAGCG 89699 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951 ||||| || || | ||||| ||| | ||||| ||| ||||||||||||||||| Sbjct 89698 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCGCCCTGGTCGACG 89639 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | ||| | ||||||| || || || | |||||| | | |||| | | ||||||||| Sbjct 89638 TAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTTAGAGGTGCCGTTG 89579 Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC- 148070 ||| | || | |||| || || | ||| ||||| | |||||||| || Sbjct 89578 GTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCA 89519 Query 148071 GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTC 148130 ||| | ||| || || ||| || | || |||||| || ||||| ||| Sbjct 89518 GCCAT-CTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTC 89460 Query 148131 GTTTTTGA---CGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGA 148187 | || | || |||| ||||| || ||| |||| | || || || Sbjct 89459 CTCCTTCATATCGACAAG---GAAACAAGAGGACAGCTGCGCCTGGGGGGTACCGGCGTT 89403 Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCA 148245 ||| || |||||| ||||| || || || || | || ||||| | || ||||| Sbjct 89402 GAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTCGA--CATCAGGTTGTAGGTCTCG 89345 Query 148246 ATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGT 148305 ||| || || | || |||||| || || | || || ||||||| ||||||||| Sbjct 89344 ATAACGCGCTCAACGTTGTCGCCCCAGATTCCGACAGCAACACGCATGATCATGTGCTGG 89285 Query 148306 GGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTA 148364 |||| ||||||| |||| || | ||| || || || | || | ||| ||| | Sbjct 89284 GGTCTCTCGGCAATCTTG-CCGTCAAGCTTCAGGAGGTAAGATCTCTCCAAGGTCTTGAA 89226 Query 148365 ACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || ||||| | ||| | || || | ||||| ||||||| Sbjct 89225 GCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 89184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476585236604880