Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq855 127 2e-24 >seq855 Length=37984 Score = 127 bits (140), Expect = 2e-24 Identities = 347/533 (65%), Gaps = 50/533 (9%) Strand=Plus/Plus Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965 ||| ||| | || |||| || ||||||| | ||||||||| || || |||| | || Sbjct 2115 CCAACTGCACCTTGAGGGCATCAACGTGGTCGGCGTAGACGTGGGCATCGCCCATGACGT 2174 Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTG--GGCCACCATGTAGGTGAGCAGCGA 147023 || | | || ||| ||| || || ||| ||| | ||||| || ||||||| Sbjct 2175 GCGTCAGGCTGCCGGGCACGAGGTCG--CATGTGCGGGCAATCATGTGCGTCAGCAGCGC 2232 Query 147024 GTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTG 147083 |||||| || |||||||| || || || ||||||||||| | |||| |||||||||||| Sbjct 2233 GTAGCTCGCGATGTTGAAAGGTACTCCGAGGCCCATGTCGCAGGACCGCTGGTACAGCTG 2292 Query 147084 -----GCACGAGA----------GCTCCCCGTCGGC------------------------ 147104 ||| | || |||||| ||||| Sbjct 2293 GCAGTGCAGGTGACCCTTGGGCTTCTCCCCTTCGGCGGGTGCGCCGCGCCCCCGCGGGTA 2352 Query 147105 ---CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCG 147160 ||||| ||||| ||| | |||||||| || ||||| ||||| || |||| Sbjct 2353 GGAGACGTAGAACTGCGCA-AACATGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCG 2411 Query 147161 CGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCG 147219 | |||||||| || || | | || | | || | |||||| |||| | || | | Sbjct 2412 CCGGGTTCCACGCGCTGAGGAGGATGCGGC-GATCGTAAGGGTTCGTCTTGAGCTTGTGG 2470 Query 147220 ATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTAC 147279 |||||| |||||||| || ||||| ||| ||||| ||| | ||| |||||| Sbjct 2471 ATAACCTCGGCAAGCTGGTCGACACCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTAC 2530 Query 147280 CTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG 147339 ||| |||||||| | ||| ||||| || || ||||| || ||||||||| | || | Sbjct 2531 TCGGCGCCAAAGTGTCGCCATTGGAATCCATAGACTGGGCCGAGGTCGCCGACTTCTCGG 2590 Query 147340 TGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 ||||||| ||| | | | || ||||| | || |||| | ||||||| || Sbjct 2591 TGCGAGAGGCCGACACTGTCCAGGAACTCACGTGAGCCGTTGCCGTCCCAAAT 2643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583456214491200