Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq245 165 1e-34 seq3337 140 5e-27 seq274 104 3e-16 seq2620 102 1e-15 seq3509 86.0 9e-11 >seq245 Length=98725 Score = 165 bits (182), Expect = 1e-34 Identities = 346/509 (68%), Gaps = 25/509 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| |||||||| | ||| ||| ||||| |||| ||||| Sbjct 89163 CACAAGGAGGAGCTTGACTCTGCCATCGTCTACGACCGCGACTTCAACTACCAATACTTC 89222 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCGA 259797 || | ||||||| | || ||||| | ||| || || | |||| || | Sbjct 89223 GGCTTCAAGACCTTGGAGAGATCTTACCTC-CTGAAGCTTGACGGCAAGATTGCCG---A 89278 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 | | |||||| | ||| |||||||||| || | || | | |||| ||| Sbjct 89279 GAGACCCCAGCACATGATCATGCGTGTTGCTGTCGG--AATCTGGGG----------CGA 89326 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916 ||| | | |||| ||| ||| |||||| | |||||| |||| ||| |||||| Sbjct 89327 CAACG---TTGAGCGCGTTATCGAGACCTACAACCTGATGTCG-AGCAAGTTCTTCACCC 89382 Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTC 259976 || | ||||| ||||| || ||||| || || | ||||| || || || || | Sbjct 89383 ACGCCTCTCCCACACTCTTCAACGCCGGTACCCCCCAGGCGCAGCTGTCCTCTTGTTTCC 89442 Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036 | | || ||||||| || || |||||||| ||||| ||||| |||||| || || Sbjct 89443 TTGTCGATATGAAGGAGGACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGTGCTA 89502 Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096 | ||||||||| ||| || ||||| ||| | || ||| | ||||| | ||| Sbjct 89503 TGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCT 89562 Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 | ||| | || |||||||||||| || |||||| | || |||||||| || || || | Sbjct 89563 CTTACATTGCTGGCACCAACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCA 89622 Query 260157 ACGACACGGCGCGCTACGTCGACCAGTGC 260185 || |||| || ||||||||||||||| || Sbjct 89623 ACAACACTGCCCGCTACGTCGACCAGGGC 89651 Score = 100 bits (110), Expect = 4e-15 Identities = 354/543 (65%), Gaps = 24/543 (4%) Strand=Plus/Plus Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGTTGC 262936 |||||||||||| | ||| || | | | || | ||||| || | |||||||| ||| Sbjct 90521 CTGGGACTGGGATTCTCTGAAGGAG-CAGATCAAGCAGCACGGTGTCCGCAACTCTCTGC 90579 Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996 |||| |||| |||||| || |||| || || |||||| |||| |||| |||| |||| Sbjct 90580 TCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGTAACAACGAGTGCTTCG 90639 Query 262997 AGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCA 263056 | ||| |||||| ||| ||| || || || | ||||| || || |||| Sbjct 90640 AACCTTACACCTCCAACATTTACCAGCGTCGTGTCCTTGCTGGCGAGTTCCAAGTCGTCA 90699 Query 263057 ACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACC 263116 ||| || | ||| | | || | ||| ||||| | || || | || | Sbjct 90700 ACCCTTGGCTCTTGAAGGACCTCGTCGACATGGGCTTGTGGTCTGACG-CTATGAAGAAC 90758 Query 263117 GGC-TCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGAT 263175 || ||||||| | | || || | ||| | | | || | || |||| Sbjct 90759 CGCATCATTGCCGAGAACGGTTCTATTCAGAACATCCCCAACA------TTCCTACCGAG 90812 Query 263176 CTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATG 263232 ||||||| || | |||||| || ||||| | || | || ||| ||| | ||| Sbjct 90813 GTCAAGGCGCTGTACAAGACTGTTTGGGAAATCTCCCAGCGC---ACCGTTGTGCAAATG 90869 Query 263233 GCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC 263292 || |||||||| | ||| |||||||| |||||||||||| | || | ||| Sbjct 90870 GCTGCCGACCGTGGCGCCTTCATCGACCAGTCGCAGTCGCTCAACATCCACATGAAAGAC 90929 Query 263293 CCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAG 263349 ||||| || | ||| || || |||||| | || ||| | ||| || ||| Sbjct 90930 CCGACTATGGGCAAGATCACCAGC---ATGCACTTCGCTGGCTGGAAGCTCGGACTGAAG 90986 Query 263350 ACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCC-ATTCAATTCACCGTCGA 263408 || ||||||||||| |||||||| | | | |||| || |||| ||||| ||||| ||||| Sbjct 90987 ACGGGCATGTACTACCTGCGCACGCAGGCTGCTG-CAGCGCCTATTCAGTTCACTGTCGA 91045 Query 263409 TCA 263411 || Sbjct 91046 CCA 91048 >seq3337 Length=46210 Score = 140 bits (154), Expect = 5e-27 Identities = 236/336 (70%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || |||||||||||||| || |||||||| |||||| | ||| Sbjct 5005 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGATTGACT 4947 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| | | | ||| || ||| | |||||| Sbjct 4946 TGTCCAAGGATCTGCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCT 4887 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||| | |||||||| ||| ||||| ||| |||||||| |||||| ||| || Sbjct 4886 CGCACATTCTCGCCTTCTTT-GCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAG 4828 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||||| ||| |||| || || || | || || || |||||||| Sbjct 4827 CGCTTCAGCGGCGAGGTTCAAGTGCCCGAAGCCCGCTGTTTCTATGGCTTCCAGATTATG 4768 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||| || || ||||||||||| || |||||||||||| ||||||| ||| Sbjct 4767 ATGGAGAACATCCATTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGAGCCG 4708 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106 | | || | || |||| || |||||||||||| Sbjct 4707 GCCCAGC-GCACGTACCTTTTCAACGCCATCGACAC 4673 Score = 100 bits (110), Expect = 4e-15 Identities = 177/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| ||||| || ||| |||| ||| | ||||| | | ||| | || || || Sbjct 4332 ATCATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTTCCTTGCGCC 4273 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| | || ||| ||||||||||| || || |||||||| | Sbjct 4272 CTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTGAGTTC-GTTGCCGACCGTC 4215 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | ||||| ||| || | ||| |||| | | ||||||| ||| | ||| Sbjct 4214 TCCTTGTTGCGCTTGGCAACGAA-AAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATG 4156 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| |||||| || | || ||| ||| Sbjct 4155 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAA 4096 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 4095 AAGGCTGGTGTCA 4083 Score = 96.9 bits (106), Expect = 5e-14 Identities = 120/159 (75%), Gaps = 13/159 (8%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| | |||||||| | | | ||| | |||| ||| ||| | Sbjct 4593 AAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCCCA 4538 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGC--- 1456236 ||| || || | |||||| || |||||||||||||| || | | | || || ||| Sbjct 4537 GCGCCTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTT-TAGTG--GTGCCTTCGCATC 4481 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| |||||||||||||| || |||||||| ||||| Sbjct 4480 CATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCT 4442 >seq274 Length=111205 Score = 104 bits (114), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584 ||||||| ||||||||||||| | || | |||||| ||||||||||| ||| | || Sbjct 88086 CATCGACACTGGCGCCGGCGTCATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCT 88027 Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644 |||||||| |||||||||||| | |||| | |||| ||| |||||||| | | Sbjct 88026 CTTCAACCACGCCGACGCCGACTTCGAGGTCGCCGAGGGCGACCGCGTCGCCCAGCTCGT 87967 Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704 ||| || || | |||||| ||| ||||| | || || || | || ||| Sbjct 87966 CGTGGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCCGAGCTCGAGGAGAGCGTGCG 87907 Query 334705 CGGCACCGGCGGCTTTGG 334722 |||| |||||||||| || Sbjct 87906 CGGCGCCGGCGGCTTCGG 87889 >seq2620 Length=60815 Score = 102 bits (112), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| ||||| || || | || |||||||| || || |||||| | |||||||| | Sbjct 50090 CGTCGGTGAGCCGGGCATACCGGAGGATGGCGCATCGCGACTGCAGCGGCTCGATGATCT 50149 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | ||| |||||||| | ||||| ||||| || |||| || | ||||| || Sbjct 50150 TGTTGGACTGATTGCAGGCGAAAGCAAAGCGCGTTGTGTTGGAATAGATCTCCATCGTTC 50209 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 || ||||| || ||||| | | || | || |||||||||||||||||| | | || Sbjct 50210 GGCGAAGGGCTTGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATCACAAGCT 50269 Query 333036 TGTGGCGCCCGTGCGGCAG 333054 ||||||| || || ||||| Sbjct 50270 TGTGGCGACCCTGGGGCAG 50288 >seq3509 Length=13417 Score = 86.0 bits (94), Expect = 9e-11 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| |||| || |||||||||||| |||| | ||||||||| | || || | ||| Sbjct 11233 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 11292 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| | |||||||||| | | |||| | ||| |||| || Sbjct 11293 TCCTTCCCCGTCGGCTTCAAGAACGGTACCGACGGCAACCTCGGCGTC-GCCATCGACGC 11351 Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914 | | || | |||||| |||| |||| Sbjct 11352 CATCGGCGCCGCCGCC--GCCAAGCACC 11377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177390862889996