Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq245 165 1e-34
seq3337 140 5e-27
seq274 104 3e-16
seq2620 102 1e-15
seq3509 86.0 9e-11
>seq245
Length=98725
Score = 165 bits (182), Expect = 1e-34
Identities = 346/509 (68%), Gaps = 25/509 (5%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| || ||| |||||||| | ||| ||| ||||| |||| |||||
Sbjct 89163 CACAAGGAGGAGCTTGACTCTGCCATCGTCTACGACCGCGACTTCAACTACCAATACTTC 89222
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCGA 259797
|| | ||||||| | || ||||| | ||| || || | |||| || |
Sbjct 89223 GGCTTCAAGACCTTGGAGAGATCTTACCTC-CTGAAGCTTGACGGCAAGATTGCCG---A 89278
Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857
| | |||||| | ||| |||||||||| || | || | | |||| |||
Sbjct 89279 GAGACCCCAGCACATGATCATGCGTGTTGCTGTCGG--AATCTGGGG----------CGA 89326
Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916
||| | | |||| ||| ||| |||||| | |||||| |||| ||| ||||||
Sbjct 89327 CAACG---TTGAGCGCGTTATCGAGACCTACAACCTGATGTCG-AGCAAGTTCTTCACCC 89382
Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTC 259976
|| | ||||| ||||| || ||||| || || | ||||| || || || || |
Sbjct 89383 ACGCCTCTCCCACACTCTTCAACGCCGGTACCCCCCAGGCGCAGCTGTCCTCTTGTTTCC 89442
Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036
| | || ||||||| || || |||||||| ||||| ||||| |||||| || ||
Sbjct 89443 TTGTCGATATGAAGGAGGACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGTGCTA 89502
Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096
| ||||||||| ||| || ||||| ||| | || ||| | ||||| | |||
Sbjct 89503 TGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCT 89562
Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156
| ||| | || |||||||||||| || |||||| | || |||||||| || || || |
Sbjct 89563 CTTACATTGCTGGCACCAACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCA 89622
Query 260157 ACGACACGGCGCGCTACGTCGACCAGTGC 260185
|| |||| || ||||||||||||||| ||
Sbjct 89623 ACAACACTGCCCGCTACGTCGACCAGGGC 89651
Score = 100 bits (110), Expect = 4e-15
Identities = 354/543 (65%), Gaps = 24/543 (4%)
Strand=Plus/Plus
Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGTTGC 262936
|||||||||||| | ||| || | | | || | ||||| || | |||||||| |||
Sbjct 90521 CTGGGACTGGGATTCTCTGAAGGAG-CAGATCAAGCAGCACGGTGTCCGCAACTCTCTGC 90579
Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996
|||| |||| |||||| || |||| || || |||||| |||| |||| |||| ||||
Sbjct 90580 TCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGTAACAACGAGTGCTTCG 90639
Query 262997 AGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCA 263056
| ||| |||||| ||| ||| || || || | ||||| || || ||||
Sbjct 90640 AACCTTACACCTCCAACATTTACCAGCGTCGTGTCCTTGCTGGCGAGTTCCAAGTCGTCA 90699
Query 263057 ACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACC 263116
||| || | ||| | | || | ||| ||||| | || || | || |
Sbjct 90700 ACCCTTGGCTCTTGAAGGACCTCGTCGACATGGGCTTGTGGTCTGACG-CTATGAAGAAC 90758
Query 263117 GGC-TCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGAT 263175
|| ||||||| | | || || | ||| | | | || | || ||||
Sbjct 90759 CGCATCATTGCCGAGAACGGTTCTATTCAGAACATCCCCAACA------TTCCTACCGAG 90812
Query 263176 CTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATG 263232
||||||| || | |||||| || ||||| | || | || ||| ||| | |||
Sbjct 90813 GTCAAGGCGCTGTACAAGACTGTTTGGGAAATCTCCCAGCGC---ACCGTTGTGCAAATG 90869
Query 263233 GCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC 263292
|| |||||||| | ||| |||||||| |||||||||||| | || | |||
Sbjct 90870 GCTGCCGACCGTGGCGCCTTCATCGACCAGTCGCAGTCGCTCAACATCCACATGAAAGAC 90929
Query 263293 CCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAG 263349
||||| || | ||| || || |||||| | || ||| | ||| || |||
Sbjct 90930 CCGACTATGGGCAAGATCACCAGC---ATGCACTTCGCTGGCTGGAAGCTCGGACTGAAG 90986
Query 263350 ACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCC-ATTCAATTCACCGTCGA 263408
|| ||||||||||| |||||||| | | | |||| || |||| ||||| ||||| |||||
Sbjct 90987 ACGGGCATGTACTACCTGCGCACGCAGGCTGCTG-CAGCGCCTATTCAGTTCACTGTCGA 91045
Query 263409 TCA 263411
||
Sbjct 91046 CCA 91048
>seq3337
Length=46210
Score = 140 bits (154), Expect = 5e-27
Identities = 236/336 (70%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || |||||||||||||| || |||||||| |||||| | |||
Sbjct 5005 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGATTGACT 4947
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891
| | || | | ||||| | | | ||| || ||| | ||||||
Sbjct 4946 TGTCCAAGGATCTGCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCT 4887
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
|||| | |||||||| ||| ||||| ||| |||||||| |||||| ||| ||
Sbjct 4886 CGCACATTCTCGCCTTCTTT-GCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAG 4828
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | ||||| ||| |||| || || || | || || || ||||||||
Sbjct 4827 CGCTTCAGCGGCGAGGTTCAAGTGCCCGAAGCCCGCTGTTTCTATGGCTTCCAGATTATG 4768
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || |||||||| || || ||||||||||| || |||||||||||| ||||||| |||
Sbjct 4767 ATGGAGAACATCCATTCCGAGACCTACTCGCTGCTCATCGACACCTACATCAAGGAGCCG 4708
Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106
| | || | || |||| || ||||||||||||
Sbjct 4707 GCCCAGC-GCACGTACCTTTTCAACGCCATCGACAC 4673
Score = 100 bits (110), Expect = 4e-15
Identities = 177/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||| ||||| || ||| |||| ||| | ||||| | | ||| | || || ||
Sbjct 4332 ATCATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTTCCTTGCGCC 4273
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| ||||||||||| ||| | || ||| ||||||||||| || || |||||||| |
Sbjct 4272 CTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTGAGTTC-GTTGCCGACCGTC 4215
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| || | ||||| ||| || | ||| |||| | | ||||||| ||| | |||
Sbjct 4214 TCCTTGTTGCGCTTGGCAACGAA-AAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATG 4156
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| |||||| || | || ||| |||
Sbjct 4155 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAA 4096
Query 1456762 AAGGCCGGCGTCA 1456774
||||| || ||||
Sbjct 4095 AAGGCTGGTGTCA 4083
Score = 96.9 bits (106), Expect = 5e-14
Identities = 120/159 (75%), Gaps = 13/159 (8%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180
|| |||||||||||||| | |||||||| | | | ||| | |||| ||| ||| |
Sbjct 4593 AAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCCCA 4538
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGC--- 1456236
||| || || | |||||| || |||||||||||||| || | | | || || |||
Sbjct 4537 GCGCCTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTT-TAGTG--GTGCCTTCGCATC 4481
Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||| |||||||||||||| || |||||||| |||||
Sbjct 4480 CATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCT 4442
>seq274
Length=111205
Score = 104 bits (114), Expect = 3e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584
||||||| ||||||||||||| | || | |||||| ||||||||||| ||| | ||
Sbjct 88086 CATCGACACTGGCGCCGGCGTCATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCT 88027
Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644
|||||||| |||||||||||| | |||| | |||| ||| |||||||| | |
Sbjct 88026 CTTCAACCACGCCGACGCCGACTTCGAGGTCGCCGAGGGCGACCGCGTCGCCCAGCTCGT 87967
Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704
||| || || | |||||| ||| ||||| | || || || | || |||
Sbjct 87966 CGTGGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCCGAGCTCGAGGAGAGCGTGCG 87907
Query 334705 CGGCACCGGCGGCTTTGG 334722
|||| |||||||||| ||
Sbjct 87906 CGGCGCCGGCGGCTTCGG 87889
>seq2620
Length=60815
Score = 102 bits (112), Expect = 1e-15
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915
|||| ||||| || || | || |||||||| || || |||||| | |||||||| |
Sbjct 50090 CGTCGGTGAGCCGGGCATACCGGAGGATGGCGCATCGCGACTGCAGCGGCTCGATGATCT 50149
Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975
| ||| |||||||| | ||||| ||||| || |||| || | ||||| ||
Sbjct 50150 TGTTGGACTGATTGCAGGCGAAAGCAAAGCGCGTTGTGTTGGAATAGATCTCCATCGTTC 50209
Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035
|| ||||| || ||||| | | || | || |||||||||||||||||| | | ||
Sbjct 50210 GGCGAAGGGCTTGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATCACAAGCT 50269
Query 333036 TGTGGCGCCCGTGCGGCAG 333054
||||||| || || |||||
Sbjct 50270 TGTGGCGACCCTGGGGCAG 50288
>seq3509
Length=13417
Score = 86.0 bits (94), Expect = 9e-11
Identities = 110/148 (74%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|||||| |||| || |||||||||||| |||| | ||||||||| | || || | |||
Sbjct 11233 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 11292
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886
| | ||| | |||||||| ||| | |||||||||| | | |||| | ||| |||| ||
Sbjct 11293 TCCTTCCCCGTCGGCTTCAAGAACGGTACCGACGGCAACCTCGGCGTC-GCCATCGACGC 11351
Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914
| | || | |||||| |||| ||||
Sbjct 11352 CATCGGCGCCGCCGCC--GCCAAGCACC 11377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177390862889996
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