Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1916 116 3e-21 seq3878 102 7e-17 seq3617 96.9 3e-15 >seq1916 Length=1946 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || |||| || |||||||| || || || Sbjct 1171 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 1230 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 1231 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1290 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| |||||||| | ||||| || || ||||| | || || || Sbjct 1291 GTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 1350 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1351 GAAGATCTGCAT 1362 >seq3878 Length=33396 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||| || ||| || |||| ||||| ||||| || || || Sbjct 29553 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAA 29494 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | | ||||||||| ||| || ||| | || Sbjct 29493 AATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTGGACTTGA-CGT 29435 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || || ||||||| ||| ||||| || || ||||| || || | Sbjct 29434 TGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGA 29375 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 29374 CAAAGATTTGCAT 29362 >seq3617 Length=84999 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| || ||| || | || || |||||||| || || || | Sbjct 45239 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGA 45298 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 45299 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45358 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||| | || || || || ||||||| || ||||| | Sbjct 45359 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACGA 45418 Query 35727 A 35727 | Sbjct 45419 A 45419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450769043018640