Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3337 120 1e-21 seq245 84.2 7e-11 >seq3337 Length=46210 Score = 120 bits (132), Expect = 1e-21 Identities = 127/166 (77%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| | |||| || || || ||||||| ||||| || | || ||||| || || | Sbjct 4546 CTTCGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTAGTGGT-GCCT 4488 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | || |||||||||||| | || |||||||| || |||| ||||||||||| |||| Sbjct 4487 TCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACG 4428 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 | || ||| ||| ||||||||| |||| ||||||||||||||| Sbjct 4427 AGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGTCT 4382 >seq245 Length=98725 Score = 84.2 bits (92), Expect = 7e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| ||||||| ||||||||| || ||||||||||| || || || ||| ||| Sbjct 89604 CCCATGCTCCGTGTCTTCAACAACACTGCCCGCTACGTCGACCAGGGCGGAAACAAGCGC 89663 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 || || || || |||||||||| ||||| |||||||| || Sbjct 89664 CCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACGCTGA 89704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588247312281310