Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq245 141 1e-28
seq3337 98.7 1e-15
seq3441 87.8 2e-12
>seq245
Length=98725
Score = 141 bits (156), Expect = 1e-28
Identities = 881/1400 (63%), Gaps = 41/1400 (3%)
Strand=Plus/Minus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||| ||||| | ||||| ||||| ||||| || || ||||||||||| || | ||||
Sbjct 90663 GGTAAATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGC 90604
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
||| || ||||| || || | | ||| ||| || | ||| | || |||||| | |
Sbjct 90603 TGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCT 90544
Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTG 110883
|||| ||| ||||||||| || || | ||||| || || ||||||||| ||||
Sbjct 90543 CCTTCAGAGAATCCCAGTCCCAG-AGATCCGAGGGTTTGACATT-CCACATGTCGTACTG 90486
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
|| | || || || | || ||||||||| | || | ||||| || | | | ||
Sbjct 90485 GAGGATGCCCTGAGAAACAGGGGAACCCTCATACGTCTGATAGGGGCCCTCCTCCTTGGC 90426
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
||| | | | |||| ||||| || || || || ||||| || |
Sbjct 90425 CAACTGAACCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAG 90366
Query 111004 CTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCGCG 111058
|| ||||| || || | ||||| || ||| ||| || |||| ||
Sbjct 90365 GTCACGAGCTTCGGGGGACTCGAAGGGCATGCGGAG-GGC-CAA---GAAGGCATCGGCA 90311
Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118
||||| |||||||| | |||||| || | ||| ||||| || || || || ||
Sbjct 90310 AGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGG 90251
Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178
|| || || || || |||| || ||| || || || | || ||||
Sbjct 90250 ACCGGGTAGTGGTTGACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACC 90191
Query 111179 TCATGAAGTTTTTCATAATC--AAAAGTGCGAG-TCTCTTCATTGACATACTTTGGAAGG 111235
|| ||||| || | | || ||| | | | | ||| || | | || ||
Sbjct 90190 TCGTGAAGCTTCTGGAAGTCGTAAACACCCTCGTTGTAGTCA---ACGAAGGTGGGCAGC 90134
Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295
|| | || |||| ||||| || || |||||| | | |||||| | || ||
Sbjct 90133 GCAAGCGAGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCA 90074
Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355
|| |||| |||||| | || || |||| ||||| ||||| ||||| ||||
Sbjct 90073 GTGCATAGGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 90014
Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415
||||||||||||||||| |||| | || ||||| || || | | ||| || || | |
Sbjct 90013 GCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATAC 89954
Query 111416 CAAACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTG 111472
|| | | ||| | | || ||| | || | ||| | ||||||||| |
Sbjct 89953 CAGAGCTTTTGGGCCTTT---AGGGTCTTGCGACCTTTGCCCATCTGCTCGTACTTCTCG 89897
Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532
|| ||||| || || ||||| || ||||| |||||| || || || || ||
Sbjct 89896 TACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCAC 89837
Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592
| |||| ||| | || | ||| || | ||||||||| || || || ||||| |||
Sbjct 89836 ATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGG 89777
Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652
| ||| || || | | || |||| || | || ||||| || | || | |
Sbjct 89776 GCGAGAAATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAG 89717
Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT- 111705
|| || | | ||| |||||||| ||||| || |||| || | || || |||
Sbjct 89716 AAGTCAAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTG 89657
Query 111706 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765
| ||||| || | || ||||| || ||| ||| || || || ||||| ||||
Sbjct 89656 TTTCCGCCC----TGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAAC 89601
Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825
| || | || || || || || ||| ||| | || | | ||
Sbjct 89600 GACGCCGTTAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTG 89541
Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885
|| || | ||||| || |||||| ||| ||||| ||||| | | || || |
Sbjct 89540 GACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTC 89481
Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945
|||||||| | ||| ||||||||||| | ||| |||||| ||| ||||| |||||
Sbjct 89480 GTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGC 89421
Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003
|| ||||| || |||||||| || || | ||||| ||| | | |||| |||
Sbjct 89420 CTGGGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTCGAC 89363
Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063
||| || ||| ||||| | || |||| || || || ||| |||| || ||
Sbjct 89362 ATCAGGTTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCGACAGCAACA 89303
Query 112064 CGCATGAACATGTACTGTGG 112083
||||||| ||||| ||| ||
Sbjct 89302 CGCATGATCATGTGCTGGGG 89283
>seq3337
Length=46210
Score = 98.7 bits (108), Expect = 1e-15
Identities = 345/533 (65%), Gaps = 27/533 (5%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| | || |||||||| |||||||||||||| || | ||| ||||| |||||
Sbjct 4100 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 4159
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484
||||| || || || | || | | | | || || | |||| |||
Sbjct 4160 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAAGCGCAACA------AGG 4213
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
||||| || | || |||||||||||| |||| | |||||||| |||| |||
Sbjct 4214 AGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGG 4273
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
|| || || || ||| | |||| | | |||||||| || || || | ||||
Sbjct 4274 GCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATGATG 4333
Query 122605 GCGTGGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661
| | |||| | | |||| | | || | | | ||||| || |||
Sbjct 4334 TCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAATACAAGAGA--CA-GGCG 4390
Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721
|| || ||| |||||||| || || || || || || || |||||| ||||| |||
Sbjct 4391 AAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGC 4450
Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781
|||||||| |||||||| | ||| | || | ||| | || |||||||| |||
Sbjct 4451 ATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCCC 4510
Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAAC 122838
|| || ||||| |||| ||||| | |||||||||| ||||| |||| || |
Sbjct 4511 TCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGAG---GACTTCTCATCGCTAATC 4567
Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
|| || | ||||| | |||||||| ||| || || || || ||||||
Sbjct 4568 CACTTGAGGGCCCAGTCGGCCTTCTTGCGAATGCAAGGGACTGT---GATGGC 4617
>seq3441
Length=28323
Score = 87.8 bits (96), Expect = 2e-12
Identities = 197/291 (68%), Gaps = 14/291 (5%)
Strand=Plus/Plus
Query 182517 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 182576
|||||||||||||||||||| || | ||| ||| | ||| ||||| ||| ||||||||
Sbjct 19088 AGACCCTTGATGTGAGAACCGTCGTGATCCTGATCGGCCATGATCATCAGATGACCATAG 19147
Query 182577 CGAAG----TTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTC 182630
|| || ||| |||| |||| | | ||||| | ||||| |||| || |
Sbjct 19148 CGTAGACTCTTC----GTATCTGTGTAG--GTCTGCTTGTGCTTCAGACCGAGGAACTGC 19201
Query 182631 TTGAGATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTC 182690
|||| | | || |||||||| || | ||| | | || ||||| || || |||
Sbjct 19202 TTGATGTTCTGGATTTCCTGGTTCTTCGTGATCTGGTCGATGGATGCGTCACGGACGTTC 19261
Query 182691 TTACA-TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACC 182749
||| |||||| ||||| ||||| || ||| | | || | | | | | | ||||
Sbjct 19262 -AACATTTTACCACGAAGGGGGAAGACTCCGATGCGGTCGGGGTCGAGAATTGCGCGACC 19320
Query 182750 CGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACA 182800
||||| || | | || || || ||||| || |||| ||||||||| ||
Sbjct 19321 GGCAACAGCCAAACTCTTGGCAGAGTCACCTTCGGTGAGAATGAGAGTGCA 19371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627997787956800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |