Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq245 141 1e-28 seq3337 98.7 1e-15 seq3441 87.8 2e-12 >seq245 Length=98725 Score = 141 bits (156), Expect = 1e-28 Identities = 881/1400 (63%), Gaps = 41/1400 (3%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| ||||| ||||| || || ||||||||||| || | |||| Sbjct 90663 GGTAAATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGC 90604 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || || | | ||| ||| || | ||| | || |||||| | | Sbjct 90603 TGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCT 90544 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||| ||| ||||||||| || || | ||||| || || ||||||||| |||| Sbjct 90543 CCTTCAGAGAATCCCAGTCCCAG-AGATCCGAGGGTTTGACATT-CCACATGTCGTACTG 90486 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | || || || | || ||||||||| | || | ||||| || | | | || Sbjct 90485 GAGGATGCCCTGAGAAACAGGGGAACCCTCATACGTCTGATAGGGGCCCTCCTCCTTGGC 90426 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 ||| | | | |||| ||||| || || || || ||||| || | Sbjct 90425 CAACTGAACCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAG 90366 Query 111004 CTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || ||||| || || | ||||| || ||| ||| || |||| || Sbjct 90365 GTCACGAGCTTCGGGGGACTCGAAGGGCATGCGGAG-GGC-CAA---GAAGGCATCGGCA 90311 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| |||||||| | |||||| || | ||| ||||| || || || || || Sbjct 90310 AGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGG 90251 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || || || || |||| || ||| || || || | || |||| Sbjct 90250 ACCGGGTAGTGGTTGACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACC 90191 Query 111179 TCATGAAGTTTTTCATAATC--AAAAGTGCGAG-TCTCTTCATTGACATACTTTGGAAGG 111235 || ||||| || | | || ||| | | | | ||| || | | || || Sbjct 90190 TCGTGAAGCTTCTGGAAGTCGTAAACACCCTCGTTGTAGTCA---ACGAAGGTGGGCAGC 90134 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || |||| ||||| || || |||||| | | |||||| | || || Sbjct 90133 GCAAGCGAGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCA 90074 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || |||| |||||| | || || |||| ||||| ||||| ||||| |||| Sbjct 90073 GTGCATAGGTTGGAGTTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 90014 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||||||||||| |||| | || ||||| || || | | ||| || || | | Sbjct 90013 GCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATAC 89954 Query 111416 CAAACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTG 111472 || | | ||| | | || ||| | || | ||| | ||||||||| | Sbjct 89953 CAGAGCTTTTGGGCCTTT---AGGGTCTTGCGACCTTTGCCCATCTGCTCGTACTTCTCG 89897 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 || ||||| || || ||||| || ||||| |||||| || || || || || Sbjct 89896 TACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCAC 89837 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 | |||| ||| | || | ||| || | ||||||||| || || || ||||| ||| Sbjct 89836 ATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGG 89777 Query 111593 GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 | ||| || || | | || |||| || | || ||||| || | || | | Sbjct 89776 GCGAGAAATAGGTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAG 89717 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT- 111705 || || | | ||| |||||||| ||||| || |||| || | || || ||| Sbjct 89716 AAGTCAAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTG 89657 Query 111706 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | ||||| || | || ||||| || ||| ||| || || || ||||| |||| Sbjct 89656 TTTCCGCCC----TGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAAC 89601 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 | || | || || || || || ||| ||| | || | | || Sbjct 89600 GACGCCGTTAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTG 89541 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 || || | ||||| || |||||| ||| ||||| ||||| | | || || | Sbjct 89540 GACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTC 89481 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 |||||||| | ||| ||||||||||| | ||| |||||| ||| ||||| ||||| Sbjct 89480 GTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGC 89421 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003 || ||||| || |||||||| || || | ||||| ||| | | |||| ||| Sbjct 89420 CTGGGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTCGAC 89363 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 ||| || ||| ||||| | || |||| || || || ||| |||| || || Sbjct 89362 ATCAGGTTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCGACAGCAACA 89303 Query 112064 CGCATGAACATGTACTGTGG 112083 ||||||| ||||| ||| || Sbjct 89302 CGCATGATCATGTGCTGGGG 89283 >seq3337 Length=46210 Score = 98.7 bits (108), Expect = 1e-15 Identities = 345/533 (65%), Gaps = 27/533 (5%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct 4100 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 4159 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484 ||||| || || || | || | | | | || || | |||| ||| Sbjct 4160 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGCCAAGCGCAACA------AGG 4213 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 ||||| || | || |||||||||||| |||| | |||||||| |||| ||| Sbjct 4214 AGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGG 4273 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || || || || ||| | |||| | | |||||||| || || || | |||| Sbjct 4274 GCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATGATG 4333 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | | |||| | | |||| | | || | | | ||||| || ||| Sbjct 4334 TCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAATACAAGAGA--CA-GGCG 4390 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| |||||||| || || || || || || || |||||| ||||| ||| Sbjct 4391 AAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGC 4450 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | || | ||| | || |||||||| ||| Sbjct 4451 ATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCCC 4510 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAAC 122838 || || ||||| |||| ||||| | |||||||||| ||||| |||| || | Sbjct 4511 TCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGAG---GACTTCTCATCGCTAATC 4567 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || || | ||||| | |||||||| ||| || || || || |||||| Sbjct 4568 CACTTGAGGGCCCAGTCGGCCTTCTTGCGAATGCAAGGGACTGT---GATGGC 4617 >seq3441 Length=28323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 197/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 182517 AGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAG 182576 |||||||||||||||||||| || | ||| ||| | ||| ||||| ||| |||||||| Sbjct 19088 AGACCCTTGATGTGAGAACCGTCGTGATCCTGATCGGCCATGATCATCAGATGACCATAG 19147 Query 182577 CGAAG----TTCAGAAACATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTTC 182630 || || ||| |||| |||| | | ||||| | ||||| |||| || | Sbjct 19148 CGTAGACTCTTC----GTATCTGTGTAG--GTCTGCTTGTGCTTCAGACCGAGGAACTGC 19201 Query 182631 TTGAGATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTC 182690 |||| | | || |||||||| || | ||| | | || ||||| || || ||| Sbjct 19202 TTGATGTTCTGGATTTCCTGGTTCTTCGTGATCTGGTCGATGGATGCGTCACGGACGTTC 19261 Query 182691 TTACA-TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACC 182749 ||| |||||| ||||| ||||| || ||| | | || | | | | | | |||| Sbjct 19262 -AACATTTTACCACGAAGGGGGAAGACTCCGATGCGGTCGGGGTCGAGAATTGCGCGACC 19320 Query 182750 CGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACA 182800 ||||| || | | || || || ||||| || |||| ||||||||| || Sbjct 19321 GGCAACAGCCAAACTCTTGGCAGAGTCACCTTCGGTGAGAATGAGAGTGCA 19371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627997787956800