Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq245 228 1e-54 seq3337 143 3e-29 >seq245 Length=98725 Score = 228 bits (252), Expect = 1e-54 Identities = 1140/1801 (63%), Gaps = 45/1801 (2%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| |||||||| || || |||||||| || | ||||| || Sbjct 91006 CGCAGGTAGTACATGCCCGTCTTCAGTCCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTG 90947 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || || |||| || ||| | || || || ||||||||| Sbjct 90946 ATCTTGCCCATAGTCGGGTCTTTCATGTGGATGTTGAGCGACTGCGACTGGTCGATGAAG 90887 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013 || || || || ||||| | |||| | | || | |||||||| |||||| Sbjct 90886 GCGCCACGGTCGGCAGCCATTTG---CACAACGGTGCGCTGGGAGATTTCCCAAACAGTC 90830 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| || ||| | || || || | ||| || || || || ||| | Sbjct 90829 TTGTACAGCGCCTTGACCTCGGTAGGAATGTTGGGGATGTTCTGAATAGA---ACCGTTC 90773 Query 118074 TTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130 | | | |||| | | ||||||| | | ||||| | || || | ||| |||| | Sbjct 90772 TCGGCAATGATGCGGTTCTTCATAGCGTCAGACCACAAGCCCATGTCGACGAGGTCCTTC 90713 Query 118131 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | ||| ||||| || ||||| || || ||| || | | | || || ||| Sbjct 90712 AAGAGCCAAGGGTTGACGACTTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTG 90653 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||| || || |||||||| |||||||||||||| || | ||| ||| || ||| Sbjct 90652 GAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGC 90593 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| || | ||| || ||| |||| ||| | | | | || | ||||| |||| Sbjct 90592 ATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAA 90533 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||||||| || | | | | | |||||| || |||||||||| || || Sbjct 90532 TCCCAGTCCCAGAGATCCGAGGGTTTGACATTCCACATGTCGTACTGGAGGATGCCCTGA 90473 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 118430 || | || || |||||| | |||| ||| |||||||| ||| ||||| | || | Sbjct 90472 GAAACAGGGGAACCCTCATACGTCTGATAGGGGCCCTCCTCCTTGGCCAACT--GAACCG 90415 Query 118431 GCCTCG--AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCT 118488 | | | ||||| ||||| || ||||| || || || || | | || | Sbjct 90414 ACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGGTCACGAGCTT 90355 Query 118489 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 118548 || ||| || || | | ||| | || |||| || ||||| || ||||||| Sbjct 90354 CGGGGGACTCGAAGGGCATGCGGAGGGCCAAGAAGGCATCGGCAAGACCCTGAACACCGA 90295 Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCC 118608 | ||||| ||||| || | ||| || || ||||| || || || || || Sbjct 90294 GACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGA 90235 Query 118609 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 118668 |||||| | || || || || ||| |||| |||| || |||||||| | | Sbjct 90234 CATCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTCTGGA 90175 Query 118669 AATCA-AAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGCGATTGACGCCAGA 118724 | || |||| | ||| | | | || | | || || || | || ||||| Sbjct 90174 AGTCGTAAACACC----CTCGTTGTAGTCAACGAAGGTGGGCAGCGCAAGCGAGGCCAGG 90119 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 || ||||| | | |||||| | | |||||| || || || ||||| | ||| || Sbjct 90118 TTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCAGTGCATAGGTTGGAG 90059 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 | ||||| |||| |||||| || || ||| ||| ||||||||||| ||| Sbjct 90058 TTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGC 89999 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCT 118904 || | || | || ||||| ||||| | || ||| || || | ||||| || | Sbjct 89998 ATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGA-----GCTTTT 89944 Query 118905 GGCACAGTGGCGT-TGGC-----TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958 || | | | || | || | |||| ||| | |||||||| ||| ||||| || Sbjct 89943 GGGCCTTTAGGGTCTTGCGACCTTTGCCCATCTGC-TCGTACTTCTCGTACAGGGCCTCG 89885 Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018 || || || || | || | ||| || || || | ||||| | ||||| ||| Sbjct 89884 AATTCCTCGCCGTAGCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCAG 89825 Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG-AG 119077 | || || ||| || | |||||||||||| || ||||||||||| || ||||| || Sbjct 89824 TCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGC-GAGAAATAG 89766 Query 119078 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 119137 || ||| ||| | || || | ||| || || |||| ||||| ||||| | | Sbjct 89765 GTCACGAGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTCAAATAC 89706 Query 119138 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTG 119194 ||| |||||||| || || ||||| | || | | || || || |||| Sbjct 89705 ATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCGCCCTG 89646 Query 119195 GTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTG 119254 || || || | |||||| ||| || ||||| ||||| |||| || || | || Sbjct 89645 GTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTTAGAGGT 89586 Query 119255 GCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAAT 119314 ||| || || || ||| ||| | || | || ||||| || | |||||| Sbjct 89585 GCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAAT 89526 Query 119315 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 119374 || || ||| ||| ||||| || || | |||| || ||||||| || ||||| Sbjct 89525 GCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGATACCCTCGAT 89466 Query 119375 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGC 119434 ||||| |||| | ||| ||||| || |||| || | | ||| ||||| || Sbjct 89465 AGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGGGGTACCGGC 89406 Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTC 119492 ||||||||| || || | |||||| ||| | | |||| |||||| || ||||||| Sbjct 89405 GTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTCGACATCAGGTTGTAGGTC 89348 Query 119493 TCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTAT 119552 || | ||| || || || || || |||| | || ||||| | ||||| Sbjct 89347 TCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCGACAGCAACACGCATGATCATGTGC 89288 Query 119553 TGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTG 119612 |||||| | || | | || || ||| || |||||||| |||||||||||||| Sbjct 89287 TGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTAAGATCTCTCCAAGGTCTTG 89228 Query 119613 A 119613 | Sbjct 89227 A 89227 >seq3337 Length=46210 Score = 143 bits (158), Expect = 3e-29 Identities = 348/522 (67%), Gaps = 20/522 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| ||| ||| | ||| |||||||| Sbjct 4100 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 4159 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA----TTGCTGGCACTCCAATCTGTTTGAGGAG 129843 || || || ||||| || || | | || | || ||| | ||||| Sbjct 4160 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTGC----CAAGCGCAACAAGGAG 4215 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 ||| || | ||| |||||||||||| |||| | ||||||||| |||| ||| Sbjct 4216 ACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGGC 4275 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || || || ||| | |||| ||| |||||| | ||||| || | |||| | Sbjct 4276 GCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACAATGATGTC 4335 Query 129964 GTGAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAA 130020 | || || | ||| || | | ||| | | | ||||| || ||| || Sbjct 4336 CTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAATACAAGAGA--CA-GGCGAA 4392 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| |||||||||||||| |||||||| || || |||||| |||||| ||||| Sbjct 4393 GTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCCGGCAT 4452 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 |||||| |||||||| | |||||| || | || | ||| |||||||| ||||| Sbjct 4453 GAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAGAAGATGCCCTC 4512 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCA 130197 || || || |||| || |||| || ||||| |||||| ||| || ||| Sbjct 4513 GACGGCAGCAAAGGCAACCAGGCGCTGGGCGAAGGA---GGACTTCTCATCGCTAATCCA 4569 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 ||| | ||||| | ||||| || || || ||||| || Sbjct 4570 CTTGAGGGCCCAGTCGGCCTTCTTGCGAATGCAAGGGACTGT 4611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618401510742480