Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq245 268 1e-66
seq3337 134 2e-26
>seq245
Length=98725
Score = 268 bits (296), Expect = 1e-66
Identities = 1022/1586 (64%), Gaps = 49/1586 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || |||| || || || || |||| ||
Sbjct 89283 CCCCAGCACATGATCATGCGTGTTGCTGTCGGAATCTGGGGCGACAACGTTGAGCGCGTT 89342
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || |||||| |||| | | ||| ||||| | || || ||||
Sbjct 89343 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT--TCACCCACGCCTCTCCCACACTCT 89400
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || | || ||||| ||| |||||| ||| | |||||||
Sbjct 89401 TCAACGCCGGTACCCCCCAGGCGCAGCTGTCCTCTTGTTTCCTTGTCGATATGAAGGAGG 89460
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|||| ||| | |||||||| | || || | | ||||| ||||| ||| |||||
Sbjct 89461 ACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCTG 89520
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| || ||||| | || |||| | | || | ||| ||| || || |
Sbjct 89521 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCACCA 89580
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| || || | || | |||| ||||| || || || ||| ||| || ||||| |
Sbjct 89581 ACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCAACAACACTGCCCGCTACG 89640
Query 104580 TAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATGG 104632
| | || ||||| | ||| || || | || |||| || ||||| |||
Sbjct 89641 TCGACCA----GGGCGGAAACAAGCGCCCCGGTGCTTTTGCCATCTACCTCGAGCCTTGG 89696
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690
||||| ||| | | || ||| | || |||| ||||| || | ||||||| |||
Sbjct 89697 CACGCTGATGTATTTGACTTCTTGGATCTGCGCAAGAACCATGGGAAGGAGGAGGTCCGC 89756
Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
| | || || || || ||| |||||||| || |||||||||||||||||||| |||
Sbjct 89757 GCT--CGTGACCTATTTCTCGCCCTCTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGA 89814
Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810
||| ||| | ||| ||||| | || || || || ||||||||| |||| | |
Sbjct 89815 AGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGCTACG 89874
Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAG----AAGGTCGGGCGACTG 104864
| ||||| || || ||||| ||| ||||||||| || | ||||||| |||
Sbjct 89875 GCGAGGAATTCGAGGCCCTGTACGAGAAGTACGAGCAGATGGGCAAAGGTCGCAAGACCC 89934
Query 104865 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924
| || ||| || | ||| | || || ||| || ||||||||||||||||||
Sbjct 89935 TAAAGGC-CCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACTGGTA 89988
Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984
|| | ||||| ||||| || || |||| ||||| || || ||||| |||||
Sbjct 89989 ACCCCTTTATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTA 90048
Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044
||| | ||||| || || || || ||| | || | | |||||| |
Sbjct 90049 CCATCCGTAACTCCAACCTATGCACTGAGATCATTGAGTACTGCGCTCCTGATGAGGTCG 90108
Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 105104
| ||||| ||||| || || | || || |||| | || || | | | || | | |
Sbjct 90109 CAGTGTGCAACCTGGCCTCGCTTGCGCTGCCCACCTTCGTTGA-CTACA-ACGAGGGTGT 90166
Query 105105 TT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162
|| || | | || || ||||| || || | ||| ||||| |||||| |
Sbjct 90167 TTACGACTTCCAGAAGCTTCACGAGGTCACCCAGGTCGTCGTTCGCAACCTCAACAGAAT 90226
Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222
|| ||| || ||||| || || ||||| || || ||| | ||||| ||
Sbjct 90227 CATCGATGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCC 90286
Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG---TCGCCACGCATT 105279
||||||||||||||||||||||| || |||| | ||||| | || || || |
Sbjct 90287 CATTGGTCTCGGTGTTCAGGGTCTTGCCGATG----CCTTCTTGGCCCTCCGCATGCCCT 90342
Query 105280 T-GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCG 105338
| || ||| |||||| || |||| | || || ||||| || || ||||| |
Sbjct 90343 TCGAGTCCCCCGAAGCTCGTGACCTCAACAAGAAGATCTTCGAGACAATCTACCACGCTG 90402
Query 105339 CTCTTG--AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396
| ||| | | |||||| ||||| ||| || || || ||| | || | ||||||
Sbjct 90403 CCCTTACCATGTCGGTTCAG--TTGGCCAAGGAGGAGGGCCCCTATCAGACGTATGAGGG 90460
Query 105397 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTC 105455
||| || | ||| || || | || || | || |||||| || || | ||| | ||
Sbjct 90461 TTCCCCTGTTTCTCAGGGCATCCTCCAGTACGACATGTGG-AATGTCAAACCCTCGGATC 90519
Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515
|| |||||||| |||| ||||| | |||||| || | ||| | || ||| ||| |
Sbjct 90520 TCTGGGACTGGGATTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGC 90579
Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 105575
|| | || || ||||| || ||| |||| | || ||||||||||| || || ||||| |
Sbjct 90580 TCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGTAACAACGAGTGCTTCG 90639
Query 105576 AACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCA 105635
|||| ||||| | ||||| || | | | | ||| || || ||||| | ||||
Sbjct 90640 AACCTTACACCTCCAACATTTACCAGCGTCGTGTCCTTGCTGGCGAGTTCCAAGTCGTCA 90699
Query 105636 ACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 105695
|| ||| || | |||||| || || || | ||||| | | ||||||| | |
Sbjct 90700 ACCCTTGGCTCTTGAAGGACCTCGTCGACATGGGCTTGTGGTCTGACGCTATGAAGAACC 90759
Query 105696 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755
||| | | | ||||| ||||| || || | ||||| | || | |||
Sbjct 90760 GCATCATTGCCGAGAACGGTTCTATTCAGAACATCCCCAACATTCCTACCGAGGTCAAGG 90819
Query 105756 AGTTGTACCGCACAGTTTGGGAAATC 105781
| ||||| || ||||||||||||
Sbjct 90820 CGCTGTACAAGACTGTTTGGGAAATC 90845
>seq3337
Length=46210
Score = 134 bits (148), Expect = 2e-26
Identities = 166/225 (74%), Gaps = 9/225 (4%)
Strand=Plus/Minus
Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 94779
|||||| ||||| || || |||| ||||| || || ||||| | |||||| ||
Sbjct 4617 GCCATC---ACAGTCCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGC 4561
Query 94780 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 94839
||| ||||| ||||| || |||| || | || ||||| || ||||| |||
Sbjct 4560 GATGAGAAGTCC---TCCTTCGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGCATC 4504
Query 94840 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 94899
||||| |||| ||||| | || | |||||||||||||| ||||||||||| |||
Sbjct 4503 TTCTTTAGTGGTGCCTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGT 4444
Query 94900 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|| ||||||||||||||| ||||||||||||||||| || |||
Sbjct 4443 CTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 4399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583229026867920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |