Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq245 268 1e-66 seq3337 134 2e-26 >seq245 Length=98725 Score = 268 bits (296), Expect = 1e-66 Identities = 1022/1586 (64%), Gaps = 49/1586 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || || |||| || Sbjct 89283 CCCCAGCACATGATCATGCGTGTTGCTGTCGGAATCTGGGGCGACAACGTTGAGCGCGTT 89342 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| ||||| | || || |||| Sbjct 89343 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT--TCACCCACGCCTCTCCCACACTCT 89400 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || | || ||||| ||| |||||| ||| | ||||||| Sbjct 89401 TCAACGCCGGTACCCCCCAGGCGCAGCTGTCCTCTTGTTTCCTTGTCGATATGAAGGAGG 89460 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| ||| | |||||||| | || || | | ||||| ||||| ||| ||||| Sbjct 89461 ACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCTG 89520 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | || |||| | | || | ||| ||| || || | Sbjct 89521 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCACCA 89580 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | |||| ||||| || || || ||| ||| || ||||| | Sbjct 89581 ACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCAACAACACTGCCCGCTACG 89640 Query 104580 TAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATGG 104632 | | || ||||| | ||| || || | || |||| || ||||| ||| Sbjct 89641 TCGACCA----GGGCGGAAACAAGCGCCCCGGTGCTTTTGCCATCTACCTCGAGCCTTGG 89696 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| ||| | | || ||| | || |||| ||||| || | ||||||| ||| Sbjct 89697 CACGCTGATGTATTTGACTTCTTGGATCTGCGCAAGAACCATGGGAAGGAGGAGGTCCGC 89756 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || || || || ||| |||||||| || |||||||||||||||||||| ||| Sbjct 89757 GCT--CGTGACCTATTTCTCGCCCTCTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGA 89814 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| ||| | ||| ||||| | || || || || ||||||||| |||| | | Sbjct 89815 AGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGCTACG 89874 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAG----AAGGTCGGGCGACTG 104864 | ||||| || || ||||| ||| ||||||||| || | ||||||| ||| Sbjct 89875 GCGAGGAATTCGAGGCCCTGTACGAGAAGTACGAGCAGATGGGCAAAGGTCGCAAGACCC 89934 Query 104865 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 | || ||| || | ||| | || || ||| || |||||||||||||||||| Sbjct 89935 TAAAGGC-CCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACTGGTA 89988 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || | ||||| ||||| || || |||| ||||| || || ||||| ||||| Sbjct 89989 ACCCCTTTATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTA 90048 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 ||| | ||||| || || || || ||| | || | | |||||| | Sbjct 90049 CCATCCGTAACTCCAACCTATGCACTGAGATCATTGAGTACTGCGCTCCTGATGAGGTCG 90108 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 105104 | ||||| ||||| || || | || || |||| | || || | | | || | | | Sbjct 90109 CAGTGTGCAACCTGGCCTCGCTTGCGCTGCCCACCTTCGTTGA-CTACA-ACGAGGGTGT 90166 Query 105105 TT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 || || | | || || ||||| || || | ||| ||||| |||||| | Sbjct 90167 TTACGACTTCCAGAAGCTTCACGAGGTCACCCAGGTCGTCGTTCGCAACCTCAACAGAAT 90226 Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 || ||| || ||||| || || ||||| || || ||| | ||||| || Sbjct 90227 CATCGATGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCC 90286 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG---TCGCCACGCATT 105279 ||||||||||||||||||||||| || |||| | ||||| | || || || | Sbjct 90287 CATTGGTCTCGGTGTTCAGGGTCTTGCCGATG----CCTTCTTGGCCCTCCGCATGCCCT 90342 Query 105280 T-GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCG 105338 | || ||| |||||| || |||| | || || ||||| || || ||||| | Sbjct 90343 TCGAGTCCCCCGAAGCTCGTGACCTCAACAAGAAGATCTTCGAGACAATCTACCACGCTG 90402 Query 105339 CTCTTG--AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396 | ||| | | |||||| ||||| ||| || || || ||| | || | |||||| Sbjct 90403 CCCTTACCATGTCGGTTCAG--TTGGCCAAGGAGGAGGGCCCCTATCAGACGTATGAGGG 90460 Query 105397 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTC 105455 ||| || | ||| || || | || || | || |||||| || || | ||| | || Sbjct 90461 TTCCCCTGTTTCTCAGGGCATCCTCCAGTACGACATGTGG-AATGTCAAACCCTCGGATC 90519 Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515 || |||||||| |||| ||||| | |||||| || | ||| | || ||| ||| | Sbjct 90520 TCTGGGACTGGGATTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGC 90579 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 105575 || | || || ||||| || ||| |||| | || ||||||||||| || || ||||| | Sbjct 90580 TCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGTAACAACGAGTGCTTCG 90639 Query 105576 AACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCA 105635 |||| ||||| | ||||| || | | | | ||| || || ||||| | |||| Sbjct 90640 AACCTTACACCTCCAACATTTACCAGCGTCGTGTCCTTGCTGGCGAGTTCCAAGTCGTCA 90699 Query 105636 ACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 105695 || ||| || | |||||| || || || | ||||| | | ||||||| | | Sbjct 90700 ACCCTTGGCTCTTGAAGGACCTCGTCGACATGGGCTTGTGGTCTGACGCTATGAAGAACC 90759 Query 105696 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 ||| | | | ||||| ||||| || || | ||||| | || | ||| Sbjct 90760 GCATCATTGCCGAGAACGGTTCTATTCAGAACATCCCCAACATTCCTACCGAGGTCAAGG 90819 Query 105756 AGTTGTACCGCACAGTTTGGGAAATC 105781 | ||||| || |||||||||||| Sbjct 90820 CGCTGTACAAGACTGTTTGGGAAATC 90845 >seq3337 Length=46210 Score = 134 bits (148), Expect = 2e-26 Identities = 166/225 (74%), Gaps = 9/225 (4%) Strand=Plus/Minus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 94779 |||||| ||||| || || |||| ||||| || || ||||| | |||||| || Sbjct 4617 GCCATC---ACAGTCCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGC 4561 Query 94780 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 94839 ||| ||||| ||||| || |||| || | || ||||| || ||||| ||| Sbjct 4560 GATGAGAAGTCC---TCCTTCGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGCATC 4504 Query 94840 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 94899 ||||| |||| ||||| | || | |||||||||||||| ||||||||||| ||| Sbjct 4503 TTCTTTAGTGGTGCCTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGT 4444 Query 94900 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||||||||||||| ||||||||||||||||| || ||| Sbjct 4443 CTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 4399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583229026867920