Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3878 120 9e-22 seq1890 100 9e-16 >seq3878 Length=33396 Score = 120 bits (132), Expect = 9e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||| ||||| || || || || || || Sbjct 28852 CATACCACCACGGAGGCGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 28793 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| ||||| |||||||| || Sbjct 28792 GGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGG 28733 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | |||||| | || Sbjct 28732 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTC 28673 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 || ||||| || | ||||| ||||| | |||| Sbjct 28672 GACCTCAAGAGTGATGGTCTTGCCGGTAACTGTT 28639 Score = 111 bits (122), Expect = 5e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || ||||| || ||||| ||||| || || || || || Sbjct 29595 TTACTGACCGCCACGCAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTA 29536 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||| | || || || || || ||||| |||||||| || || || || ||||| || Sbjct 29535 ATCGCTCAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTC 29476 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || || || || || || || ||||| | || || || || || | ||||| | Sbjct 29475 AGGGGGGATACCCTCCTTGTCTTGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGA 29416 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | |||| ||||||||||| | || || ||||| || ||||| Sbjct 29415 CTCAACCTCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || |||||||| || || || || || || || Sbjct 29136 CATACCACCACGGAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 29077 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || ||||||||||| | |||||||| || || Sbjct 29076 GGACAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGG 29017 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || ||||| || || | || || | || Sbjct 29016 AGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTC 28957 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 28956 TACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 28918 >seq1890 Length=79273 Score = 100 bits (110), Expect = 9e-16 Identities = 101/131 (77%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | || || ||| ||||| | ||||||||| || |||||||| || Sbjct 64750 CGAGGCACACCAAGCGTGACGTTC---TTAGAAGAAACACCAGCGAAATGGAAAGTGTTC 64694 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| || ||||| ||||| ||||| || Sbjct 64693 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCCGCAATGACGCCCACCATCTCA 64634 Query 377578 CCAGGATTGAC 377588 || || |||| Sbjct 64633 CCCGGGCTGAC 64623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515169792929474