Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq3878 120 9e-22
seq1890 100 9e-16
>seq3878
Length=33396
Score = 120 bits (132), Expect = 9e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || ||||| ||||| || || || || || ||
Sbjct 28852 CATACCACCACGGAGGCGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 28793
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || ||||| ||||| ||||| |||||||| ||
Sbjct 28792 GGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGG 28733
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || ||||| || || | || || || || || | |||||| | ||
Sbjct 28732 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTC 28673
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720
|| ||||| || | ||||| ||||| | ||||
Sbjct 28672 GACCTCAAGAGTGATGGTCTTGCCGGTAACTGTT 28639
Score = 111 bits (122), Expect = 5e-19
Identities = 165/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || ||||| || ||||| ||||| || || || || ||
Sbjct 29595 TTACTGACCGCCACGCAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTA 29536
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
||| | || || || || || ||||| |||||||| || || || || ||||| ||
Sbjct 29535 ATCGCTCAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTC 29476
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
||| || || || || || || || ||||| | || || || || || | ||||| |
Sbjct 29475 AGGGGGGATACCCTCCTTGTCTTGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGA 29416
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | |||| ||||||||||| | || || ||||| || |||||
Sbjct 29415 CTCAACCTCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362
Score = 98.7 bits (108), Expect = 3e-15
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || |||||||| || || || || || || ||
Sbjct 29136 CATACCACCACGGAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 29077
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || || ||||||||||| | |||||||| || ||
Sbjct 29076 GGACAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGG 29017
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 29016 AGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTC 28957
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || || | ||||| || || || || || ||
Sbjct 28956 TACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 28918
>seq1890
Length=79273
Score = 100 bits (110), Expect = 9e-16
Identities = 101/131 (77%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| ||||||||| | || || ||| ||||| | ||||||||| || |||||||| ||
Sbjct 64750 CGAGGCACACCAAGCGTGACGTTC---TTAGAAGAAACACCAGCGAAATGGAAAGTGTTC 64694
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| |||||||||||| ||||| || ||||| ||||| ||||| ||
Sbjct 64693 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCCGCAATGACGCCCACCATCTCA 64634
Query 377578 CCAGGATTGAC 377588
|| || ||||
Sbjct 64633 CCCGGGCTGAC 64623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515169792929474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |