Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq245 257 2e-63
seq3441 131 2e-25
seq3337 89.7 6e-13
>seq245
Length=98725
Score = 257 bits (284), Expect = 2e-63
Identities = 469/681 (69%), Gaps = 18/681 (3%)
Strand=Plus/Plus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
|||| ||| || |||||| | || || || |||||||| ||||| || | ||| ||
Sbjct 89370 AAGTTCTTCACCCACGCCTCTCCCACACTCTTCAACGCCGGTACCCCCCAGGCGCAGCTG 89429
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
|| || ||||| || | |||||||| ||||| ||||| || |||||||| || |||
Sbjct 89430 TCCTCTTGTTTCCTTGTCGATATGAAGGAGGACTCTATCGAGGGTATCTACGACACCCTC 89489
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG-- 53444
||| ||||| ||||||||| | | ||||| || ||| || || || | ||
Sbjct 89490 AAGACCTGTGCTATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACG--TCCACCGCA 89547
Query 53445 TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504
|||| || | |||| | || || || |||||| | | | || |||| || |
Sbjct 89548 TCCGCGCTACCGGCTCTTACATTGCTGGCACCAACGGCACCTCTAACGGCGTCGTTCCCA 89607
Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564
||||||| |||||||||||||| ||||| |||||| ||||||| || |||||| |
Sbjct 89608 TGCTCCGTGTCTTCAACAACACTGCCCGCTACGTCGACCAGGGCGGAAACAAGCGCCCCG 89667
Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624
| | || ||||||||||||||||| |||||||| || | | || || | || ||||
Sbjct 89668 GTGCTTTTGCCATCTACCTCGAGCCTTGGCACGCTGATGTATTTGACTTCTTGGATCTGC 89727
Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTC 53684
| ||| || || | || ||| | ||| |||||||| ||| || || ||||| |
Sbjct 89728 GCAAGAACCATGGGAAGGAGGAGGTCCGCGCTCGTGACCTATTTCTCGCCCTCTGGATCC 89787
Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744
| || ||||||||| | | ||||||||| ||| || ||| || |||||||| ||||
Sbjct 89788 CCGATCTCTTCATGAAGAGAGTGGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACG 89847
Query 53745 AGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTAC 53803
||||||| || ||| | | || |||||| ||||| || | | |||| || ||||
Sbjct 89848 AGTGCCCTGGTCTCGCCGACTG-CTACGGCGAGGAATTCGAGGCCCTGTACGAGAAGTAC 89906
Query 53804 --GCAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCA 53857
|||| | | || ||| |||| | ||||| | || | ||| ||||
Sbjct 89907 GAGCAGATGGGCAAAGGTCGC------AAGACCCTAAAGGCCCAAAAGCTCTGGTATGCC 89960
Query 53858 ATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAAC 53917
|||||| || || ||||| || | || | ||| |||||||||| | | ||||
Sbjct 89961 ATCCTCGAGGCTCAAACCGAGACTGGTAACCCCTTTATGCTCTACAAGGATGCTGCCAAC 90020
Query 53918 GAGAAGAGCAACCAGAAGAAC 53938
||||||||||||||||||
Sbjct 90021 CGCAAGAGCAACCAGAAGAAC 90041
Score = 107 bits (118), Expect = 2e-18
Identities = 543/850 (64%), Gaps = 34/850 (4%)
Strand=Plus/Plus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||||||||| || || | || || ||| ||||| ||| | |||||
Sbjct 90171 GACTTCCAGAAGCTTCACGAGGTCACCCAGGTCGTCGTTCGCAACCTCAACAGAATCATC 90230
Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216
|| || |||||||| | | ||| ||||| |||| | || ||||| |||||
Sbjct 90231 GATGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATT 90290
Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276
| ||||||| ||||| | ||||| |||| || ||| | |||||||||| ||
Sbjct 90291 GGTCTCGGTGTTCAGGGTCTTGCCGATGCCTTCTTGGCCCTCCGCATGCCCTTCGAGTCC 90350
Query 55277 ---GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332
||| ||||| || | ||| || | |||||| || | |||||| || || ||
Sbjct 90351 CCCGAA---GCTCGTGACCTCAACAAGAAGATCTTCGAGACA-ATCTACCACGCTGCCCT 90406
Query 55333 CGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCC 55392
|||| ||| |||| | | ||||| |||| |||||| | ||| ||
Sbjct 90407 TACCATGTCGGTTCAGTTGGCCAAGGAGGAGGGCCCCTATCAGACGTATGAGGGTTCCCC 90466
Query 55393 AGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCC---ATGTTTGA 55449
| | |||| | ||||||| ||| ||| || | ||| |||| || | ||
Sbjct 90467 TGTTTCTCAGGGCATCCTCCAGTACGAC--ATGTGGAATGTCAAACCCTCGGATCTCTGG 90524
Query 55450 CA-----AGT---TGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTG 55501
| | | ||||| | | || | | || | |||||||| ||||||||
Sbjct 90525 GACTGGGATTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTC 90584
Query 55502 GCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCG 55561
||||| ||||| || || || |||||||| |||| ||||||||| ||||| ||
Sbjct 90585 GCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGTAACAACGAGTGCTTCGAACCT 90644
Query 55562 TACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAG 55621
||||| ||||||| |||| ||| || ||| || || ||||| | |||||
Sbjct 90645 TACACCTCCAACATTTACCAGCGTCGTGTCCTTGCTGGCGAGTTCCAAGTCGTCAACCCT 90704
Query 55622 CACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC-CGCAGATCAAGA--CGGAT 55678
||| | |||||||| | || | |||| ||| || |||| || ||
Sbjct 90705 TGGCTCTTGAAGGACCTCGTCGACATGGGCTTGTGGTCTGACGCT-ATGAAGAACCGCAT 90763
Query 55679 -ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGG 55733
|||| |||||| || | ||||| | | |||||| | | | ||||||
Sbjct 90764 CATTGCCGAGAACGGT---TCTATTCAGAACATCCCCAACATTCCTACCGAGG-TCAAGG 90819
Query 55734 AGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATC 55793
| | ||| ||| || ||||| || | ||| | | | | ||| ||| || |
Sbjct 90820 CGCTGTACAAGACTGTTTGGGAAATCTCCCAGCGCACCGTTGTGCAAATGGCTGCCGACC 90879
Query 55794 GTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGG 55853
|||| || | |||||||||||| ||||| || |||||| |||| | | || | |||
Sbjct 90880 GTGGCGCCTTCATCGACCAGTCGCAGTCGCTCAACATCCACATGAAAGACCCGACTATGG 90939
Query 55854 CCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACT 55913
|||| | | | |||||||| || |||||| ||||| |||||||| |||||||
Sbjct 90940 GCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGACTGAAGACGGGCATGTACT 90999
Query 55914 ATCTGCGGAC 55923
| ||||| ||
Sbjct 91000 ACCTGCGCAC 91009
>seq3441
Length=28323
Score = 131 bits (144), Expect = 2e-25
Identities = 203/288 (70%), Gaps = 4/288 (1%)
Strand=Plus/Plus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
|||||| |||| || ||||| || ||||| |||||||| | |||||| | |||
Sbjct 18337 AATGTATCGAGGACTGGCAGCGTCTGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 18396
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
||||||| | ||| | |||||||| |||||||||||| || || | | | || ||
Sbjct 18397 GGGCTCCAGGCAGTTGATGTTGTTGGAGCCCACAAAGTTCTGGGCAAGGCCAATGATGGT 18456
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
|| ||| | || || ||||| || | ||||||||| | | ||| || || |
Sbjct 18457 CTGCTGAAGGGAGACTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCTAA 18516
Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547
| | | |||||| || |||| ||||||| |||||| ||||||||| || ||||||
Sbjct 18517 TTCAACAACCTTCTGATCCTTGAC--CAGGTTCCTCTTGAAGCAGGCATAGATAACCTTG 18574
Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTG 117595
||||| | |||||||| ||||| | ||| ||||| || ||| ||
Sbjct 18575 CGCTGGCCGGGCTTCAGCCCATCGACGACGGACGGGATGGATCGCATG 18622
Score = 120 bits (132), Expect = 3e-22
Identities = 201/288 (70%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
|||||||| | ||||| || || ||||| || || || | || || | ||| |||
Sbjct 18338 ATGTATCGAGGACTGGCAGCGTCTGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 18397
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| ||| ||||| |||||||| |||||| || ||||| || || | |||| ||
Sbjct 18398 GGCTCCAGGCAGTTGATGTTGTTGGAGCCCACAAAGTTCTGGGC--AAGGC-CAATGATG 18454
Query 152155 CCCTGCAGACTCG---CTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCC 152211
|||| || | |||| |||||||| || | ||||||||| | ||||| || ||
Sbjct 18455 GTCTGCTGAAGGGAGACTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCT 18514
Query 152212 AACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTG 152271
|| | | |||||| ||| | ||||||| |||||| ||||| || || ||||||
Sbjct 18515 AATTCAACAACCTTCTGATCCTTGACCAGGTTCCTCTTGAAGCAGGCATAGATAACCTTG 18574
Query 152272 CGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319
|||||| || |||| || || || ||| || || || ||| ||
Sbjct 18575 CGCTGGCCGGGCTTCAGCCCATCGACGACGGACGGGATGGATCGCATG 18622
>seq3337
Length=46210
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
|| || ||||| || ||||||||||| | ||| ||||||| ||||| |||||| |||
Sbjct 4442 AGACCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAG 4501
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
|||||||| ||||| |||||||| || ||||| || |||||
Sbjct 4502 AAGATGCCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAA 4545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547186190408400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |