Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq245 257 2e-63 seq3441 131 2e-25 seq3337 89.7 6e-13 >seq245 Length=98725 Score = 257 bits (284), Expect = 2e-63 Identities = 469/681 (69%), Gaps = 18/681 (3%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| ||| || |||||| | || || || |||||||| ||||| || | ||| || Sbjct 89370 AAGTTCTTCACCCACGCCTCTCCCACACTCTTCAACGCCGGTACCCCCCAGGCGCAGCTG 89429 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || ||||| || | |||||||| ||||| ||||| || |||||||| || ||| Sbjct 89430 TCCTCTTGTTTCCTTGTCGATATGAAGGAGGACTCTATCGAGGGTATCTACGACACCCTC 89489 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG-- 53444 ||| ||||| ||||||||| | | ||||| || ||| || || || | || Sbjct 89490 AAGACCTGTGCTATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACG--TCCACCGCA 89547 Query 53445 TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 |||| || | |||| | || || || |||||| | | | || |||| || | Sbjct 89548 TCCGCGCTACCGGCTCTTACATTGCTGGCACCAACGGCACCTCTAACGGCGTCGTTCCCA 89607 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 ||||||| |||||||||||||| ||||| |||||| ||||||| || |||||| | Sbjct 89608 TGCTCCGTGTCTTCAACAACACTGCCCGCTACGTCGACCAGGGCGGAAACAAGCGCCCCG 89667 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 | | || ||||||||||||||||| |||||||| || | | || || | || |||| Sbjct 89668 GTGCTTTTGCCATCTACCTCGAGCCTTGGCACGCTGATGTATTTGACTTCTTGGATCTGC 89727 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTC 53684 | ||| || || | || ||| | ||| |||||||| ||| || || ||||| | Sbjct 89728 GCAAGAACCATGGGAAGGAGGAGGTCCGCGCTCGTGACCTATTTCTCGCCCTCTGGATCC 89787 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | || ||||||||| | | ||||||||| ||| || ||| || |||||||| |||| Sbjct 89788 CCGATCTCTTCATGAAGAGAGTGGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACG 89847 Query 53745 AGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTAC 53803 ||||||| || ||| | | || |||||| ||||| || | | |||| || |||| Sbjct 89848 AGTGCCCTGGTCTCGCCGACTG-CTACGGCGAGGAATTCGAGGCCCTGTACGAGAAGTAC 89906 Query 53804 --GCAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCA 53857 |||| | | || ||| |||| | ||||| | || | ||| |||| Sbjct 89907 GAGCAGATGGGCAAAGGTCGC------AAGACCCTAAAGGCCCAAAAGCTCTGGTATGCC 89960 Query 53858 ATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAAC 53917 |||||| || || ||||| || | || | ||| |||||||||| | | |||| Sbjct 89961 ATCCTCGAGGCTCAAACCGAGACTGGTAACCCCTTTATGCTCTACAAGGATGCTGCCAAC 90020 Query 53918 GAGAAGAGCAACCAGAAGAAC 53938 |||||||||||||||||| Sbjct 90021 CGCAAGAGCAACCAGAAGAAC 90041 Score = 107 bits (118), Expect = 2e-18 Identities = 543/850 (64%), Gaps = 34/850 (4%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||||||||| || || | || || ||| ||||| ||| | ||||| Sbjct 90171 GACTTCCAGAAGCTTCACGAGGTCACCCAGGTCGTCGTTCGCAACCTCAACAGAATCATC 90230 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 || || |||||||| | | ||| ||||| |||| | || ||||| ||||| Sbjct 90231 GATGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATT 90290 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | ||||||| ||||| | ||||| |||| || ||| | |||||||||| || Sbjct 90291 GGTCTCGGTGTTCAGGGTCTTGCCGATGCCTTCTTGGCCCTCCGCATGCCCTTCGAGTCC 90350 Query 55277 ---GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332 ||| ||||| || | ||| || | |||||| || | |||||| || || || Sbjct 90351 CCCGAA---GCTCGTGACCTCAACAAGAAGATCTTCGAGACA-ATCTACCACGCTGCCCT 90406 Query 55333 CGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCC 55392 |||| ||| |||| | | ||||| |||| |||||| | ||| || Sbjct 90407 TACCATGTCGGTTCAGTTGGCCAAGGAGGAGGGCCCCTATCAGACGTATGAGGGTTCCCC 90466 Query 55393 AGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCC---ATGTTTGA 55449 | | |||| | ||||||| ||| ||| || | ||| |||| || | || Sbjct 90467 TGTTTCTCAGGGCATCCTCCAGTACGAC--ATGTGGAATGTCAAACCCTCGGATCTCTGG 90524 Query 55450 CA-----AGT---TGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTG 55501 | | | ||||| | | || | | || | |||||||| |||||||| Sbjct 90525 GACTGGGATTCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTC 90584 Query 55502 GCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCG 55561 ||||| ||||| || || || |||||||| |||| ||||||||| ||||| || Sbjct 90585 GCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGTAACAACGAGTGCTTCGAACCT 90644 Query 55562 TACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAG 55621 ||||| ||||||| |||| ||| || ||| || || ||||| | ||||| Sbjct 90645 TACACCTCCAACATTTACCAGCGTCGTGTCCTTGCTGGCGAGTTCCAAGTCGTCAACCCT 90704 Query 55622 CACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC-CGCAGATCAAGA--CGGAT 55678 ||| | |||||||| | || | |||| ||| || |||| || || Sbjct 90705 TGGCTCTTGAAGGACCTCGTCGACATGGGCTTGTGGTCTGACGCT-ATGAAGAACCGCAT 90763 Query 55679 -ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGG 55733 |||| |||||| || | ||||| | | |||||| | | | |||||| Sbjct 90764 CATTGCCGAGAACGGT---TCTATTCAGAACATCCCCAACATTCCTACCGAGG-TCAAGG 90819 Query 55734 AGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATC 55793 | | ||| ||| || ||||| || | ||| | | | | ||| ||| || | Sbjct 90820 CGCTGTACAAGACTGTTTGGGAAATCTCCCAGCGCACCGTTGTGCAAATGGCTGCCGACC 90879 Query 55794 GTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGG 55853 |||| || | |||||||||||| ||||| || |||||| |||| | | || | ||| Sbjct 90880 GTGGCGCCTTCATCGACCAGTCGCAGTCGCTCAACATCCACATGAAAGACCCGACTATGG 90939 Query 55854 CCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACT 55913 |||| | | | |||||||| || |||||| ||||| |||||||| ||||||| Sbjct 90940 GCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGACTGAAGACGGGCATGTACT 90999 Query 55914 ATCTGCGGAC 55923 | ||||| || Sbjct 91000 ACCTGCGCAC 91009 >seq3441 Length=28323 Score = 131 bits (144), Expect = 2e-25 Identities = 203/288 (70%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 |||||| |||| || ||||| || ||||| |||||||| | |||||| | ||| Sbjct 18337 AATGTATCGAGGACTGGCAGCGTCTGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 18396 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 ||||||| | ||| | |||||||| |||||||||||| || || | | | || || Sbjct 18397 GGGCTCCAGGCAGTTGATGTTGTTGGAGCCCACAAAGTTCTGGGCAAGGCCAATGATGGT 18456 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 || ||| | || || ||||| || | ||||||||| | | ||| || || | Sbjct 18457 CTGCTGAAGGGAGACTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCTAA 18516 Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547 | | | |||||| || |||| ||||||| |||||| ||||||||| || |||||| Sbjct 18517 TTCAACAACCTTCTGATCCTTGAC--CAGGTTCCTCTTGAAGCAGGCATAGATAACCTTG 18574 Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTG 117595 ||||| | |||||||| ||||| | ||| ||||| || ||| || Sbjct 18575 CGCTGGCCGGGCTTCAGCCCATCGACGACGGACGGGATGGATCGCATG 18622 Score = 120 bits (132), Expect = 3e-22 Identities = 201/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 |||||||| | ||||| || || ||||| || || || | || || | ||| ||| Sbjct 18338 ATGTATCGAGGACTGGCAGCGTCTGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 18397 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| ||| ||||| |||||||| |||||| || ||||| || || | |||| || Sbjct 18398 GGCTCCAGGCAGTTGATGTTGTTGGAGCCCACAAAGTTCTGGGC--AAGGC-CAATGATG 18454 Query 152155 CCCTGCAGACTCG---CTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCC 152211 |||| || | |||| |||||||| || | ||||||||| | ||||| || || Sbjct 18455 GTCTGCTGAAGGGAGACTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCT 18514 Query 152212 AACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTG 152271 || | | |||||| ||| | ||||||| |||||| ||||| || || |||||| Sbjct 18515 AATTCAACAACCTTCTGATCCTTGACCAGGTTCCTCTTGAAGCAGGCATAGATAACCTTG 18574 Query 152272 CGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 |||||| || |||| || || || ||| || || || ||| || Sbjct 18575 CGCTGGCCGGGCTTCAGCCCATCGACGACGGACGGGATGGATCGCATG 18622 >seq3337 Length=46210 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| ||||||| ||||| |||||| ||| Sbjct 4442 AGACCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCGAAGGCACCACTAAAG 4501 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||||||| ||||| |||||||| || ||||| || ||||| Sbjct 4502 AAGATGCCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCGAA 4545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547186190408400