Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq245 354 9e-93 seq3878 185 1e-41 seq1916 167 3e-36 seq3441 116 4e-21 seq3617 114 1e-20 >seq245 Length=98725 Score = 354 bits (392), Expect = 9e-93 Identities = 1216/1870 (65%), Gaps = 82/1870 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||| ||||| ||||||||||||||||| || || ||||||||| | |||| Sbjct 91015 GCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGTCCGAGCTTCCAGCCAGCGAAGTGC 90956 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | || |||| | |||| |||||| || ||||| ||||| Sbjct 90955 ATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATGTGGATGTTGAGCGACTGCGACTGG 90896 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||| || ||||| || || ||||||| | || | || | |||||||| Sbjct 90895 TCGATGAAGGCGCCACGGTCGGCAGCCATTTGCACAACGGTGCGCTGGGAGATTTCCCAA 90836 Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCA 80268 || || |||| |||| | ||| ||||||| | | | | | | | Sbjct 90835 ACAGTCTTGTACAGCGCCTTG---ACCTCGGTAGGAATGTTGGGGATGTTCTGAATAGAA 90779 Query 80269 CCGTCCTTTACAATTTGATTT--TTCAATTCAGA-CGTCCAGACACCAAGCTTGTGCAGA 80325 |||| || |||| ||| ||| |||| | |||| |||| ||||| || || Sbjct 90778 CCGTTCTCGGCAAT--GATGCGGTTC--TTCATAGCGTC-AGACCACAAGCCCATGTCGA 90724 Query 80326 -----TCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCA 80380 || |||| || ||| | | ||||| || || ||| |||||| Sbjct 90723 CGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGGAACTCGCCAGCAAGGACACGACGCT 90664 Query 80381 GATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGC 80440 | || | ||| | |||||||| || || ||||||||| || | |||||||| |||| Sbjct 90663 GGTAAATGTTGGAGGTGTAAGGTTCGAAGCACTCGTTGTTACCCAAGATCTGAGAGGTGC 90604 Query 80441 TCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCT 80500 | || |||||||| || |||| | ||| || || || | ||||||| |||||| | || Sbjct 90603 TGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCT 90544 Query 80501 CGCGCA---AATCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTG 80552 | || |||| | ||| | ||| | | | | |||| ||||||||||| Sbjct 90543 CCTTCAGAGAATCCCAGTCCCAGAGATC-----CGAGGGTTTGACATTCCACATGTCGTA 90489 Query 80553 CTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT 80612 ||| | |||||||| || | || || ||| | |||||| || ||||||||| ||| Sbjct 90488 CTGGAGGATGCCCTGAGAAACAGGGGAACCCTCATACGTCTGATAGGGGCCCTCCTCCTT 90429 Query 80613 GGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||||| || | |||| ||||||| ||||| || || ||| |||| |||||| Sbjct 90428 GGCCAACTGAACCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAAGATCTTCTTGTT 90369 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | | || || | ||| ||||| | || || | || ||| | || || || Sbjct 90368 GAGGTCACGAGCTTCGGGGGACTCGAAGGGCATGCGGAGGGCCAAGAAGGCATCGGCAAG 90309 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAA 80791 |||||||| |||| | || |||||||||||| |||| | | || |||||| | | Sbjct 90308 ACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTT-GCTGTTGCGAGCCTCCTGGA 90250 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| |||||||| | ||| |||||||| || ||| | || || | Sbjct 90249 CCGGGTAGTGGTTGACATCGATGATTCTGTTGAGGTTGCGAACGACGACCTGGGTGACCT 90190 Query 80852 CATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCA 80905 | ||||| ||||| |||||| | | ||| | || || | || || | Sbjct 90189 CGTGAAGCTTCTGGAAGTCGTAAACACCCTCGTTGTAGTCAACGAAGGTGGGCAGCGCAA 90130 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGC 80965 | || ||||| |||||||| || ||||| |||| | | |||| | ||| || |||| Sbjct 90129 GCGAGGCCAGGTTGCACACTGCGACCTCATCAGGAGCGCAGTACTCAATGATCTCAGTGC 90070 Query 80966 ACAAATTAGAAGACTTA---ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAG 81022 | | || || ||| || ||||||||||| |||||||| |||| |||| || Sbjct 90069 ATAGGTTGGAG---TTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAG 90013 Query 81023 CGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCC 81082 | ||||||||| ||| | ||| |||| |||||| || | || ||||||||| | || Sbjct 90012 CATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACC 89953 Query 81083 AAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCT-TCGGCCACATACTTGGCGTAA 81141 | | || | ||||| | |||||| |||||| || || | ||||| |||| Sbjct 89952 AGAGCTTTTGGGCCTTTAGGGTCTTGCGACCTTTGCCCATCTGCT-CGTACTTCTCGTAC 89894 Query 81142 GCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACAT 81200 | ||||| | | |||| | ||| | | ||| | ||||||||||| |||||||| Sbjct 89893 AGGGCCTCGAATTCCTCGCCGTAGCAGT-CGGCGAGACCAGGGCACTCGTTGGGGCACAT 89835 Query 81201 CAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGC 81260 || ||||||| || ||||| || ||||||||| || |||||||||||||| Sbjct 89834 GAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGC 89775 Query 81261 GGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318 | || ||||| || |||||| ||||||| | || ||||| ||||| || | Sbjct 89774 GAGAAATAGGTCACG--AGCGCGGACCTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAG 89717 Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG 81378 ||||| | | || || ||||| ||||| || || | ||| | | || ||| | Sbjct 89716 AAGTCAAATACATCAGCGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTG 89657 Query 81379 ---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435 || ||||||| |||||| |||||||| ||| || ||||| | ||| || | || Sbjct 89656 TTTCCGCCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGACG 89597 Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGA 81493 || | || ||||| || || | || || || | ||||| | | || Sbjct 89596 CCGTTAGAGGTGCCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACG 89537 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 ||| ||||| |||||||| | | ||| || ||| |||||| || | ||| || | Sbjct 89536 TTG--AGACCAATGCCACCAGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTGTCGT 89479 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || |||||||| || | ||||| || | | |||||| |||| || | || Sbjct 89478 AGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAACAAGAGGACAGCT--GCGC 89421 Query 81614 TTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 | | | ||||| ||||| ||||| || | ||||| |||| | | | ||||| Sbjct 89420 CTGGGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTCGACAT 89361 Query 81672 CAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACG 81731 ||||| ||||| || | ||||| || | ||| || || |||| ||| ||||| Sbjct 89360 CAGGTTGTAGGTCTCGATAACGCGCTCAACGTTGTCGCCCCAGATTCCGACAGCAACACG 89301 Query 81732 CATAAACATGTACTGGGGCGTCTCG-----CCTGC-------GTTCAGG----TACATCT 81775 ||| | ||||| |||||| ||||| | ||| |||||| | ||| Sbjct 89300 CATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTAAGATC- 89242 Query 81776 TCTGCAAAGTCTTGATGCCGAAGTAACCGAACCCGTAGTCGCGTTCGCTGTCGATCACAG 81835 ||| ||| ||||||| ||||||||| | | | ||||||| ||| | |||| ||| Sbjct 89241 TCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAG 89182 Query 81836 CATCTAGCTC 81845 || ||||| Sbjct 89181 AGTCAAGCTC 89172 >seq3878 Length=33396 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||||||||| || ||||| || || ||||||||||| ||| Sbjct 29134 ATGCAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAATCATCA 29193 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || ||||||||||||||||| || ||||| |||||| Sbjct 29194 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 29253 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || ||||| || ||||| |||||||||| ||||| || | ||||| || Sbjct 29254 CAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAAC 29313 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || || ||| | || || ||||| || Sbjct 29314 ATCCAGAAGGAATCTACTCTCCACCTCGTCCTTCGCCTGCGCGGAGG 29360 Score = 167 bits (184), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | ||||| ||||| ||||| | ||||||||||| | Sbjct 29362 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACGATTACGTTGGAGGTTGAGTCTTCT 29421 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | ||||| || ||||||||||| || || || |||||| Sbjct 29422 GACACTATCGACAACGTCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 29481 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || ||||| ||||| |||||||| ||||| | ||| ||||| ||| || || || Sbjct 29482 CAGCGCCTGATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGC-GATTACAA 29540 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || ||||| || || ||| | ||||| || || || || Sbjct 29541 CATCCAGAAGGAGTCGACTCTCCACCTTGTCCTTCGTCTGCGTGGCGGTCA 29591 Score = 154 bits (170), Expect = 2e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || ||||||||||| ||||| ||||| ||| | || ||||| Sbjct 28644 TTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGT 28703 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | || || |||||||||||||| || ||||| || ||||||||||| || || ||||| | Sbjct 28704 CCAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCA 28763 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| || ||||| | || ||||| | ||||| || |||| ||||| |||||||| | Sbjct 28764 AGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCC 28823 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || | || || || ||||| Sbjct 28824 ACTTGGTTCTCCGCCTCCGTGGTGG 28848 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||| ||||| ||||| || | ||| | Sbjct 28918 GTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCGAC 28977 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| || ||||| |||||||| || | || Sbjct 28978 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGATC 29037 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| |||||||||| ||||| || | ||||| || |||| |||||| Sbjct 29038 TTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGGAA 29097 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || | || | ||||| || ||||| Sbjct 29098 TCTACTCTCCACTTGGTGCTTCGTCTCCGTGGTGG 29132 >seq1916 Length=1946 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || |||||||| ||||| Sbjct 1365 ATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 1306 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 1305 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 1246 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 1245 CAGCAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 1186 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || ||| | || || |||||||| Sbjct 1185 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGCCTGCGCGGTGG 1136 >seq3441 Length=28323 Score = 116 bits (128), Expect = 4e-21 Identities = 202/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| || ||| ||||| || ||| | || || || ||||| ||||||||||| Sbjct 18627 GATAACATGCGATCCATCCCGTCCGTCGTCGATGGGCTGAAGCCCGGCCAGCGCAAGGTT 18568 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGCGCAGCTGTCGGG 32072 || || |||||| |||||| ||||||| || || || |||||| | | | | || Sbjct 18567 ATCTATGCCTGCTTCAAGAGGAACCTGGTCAAGGATCA-GAAGGTTGTTGAATTAGCCGG 18509 Query 32073 CTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGT 32132 ||| | | ||||| ||| |||| ||||||||||| | || || ||| ||||| | Sbjct 18508 TTACATTTCCGAGCAGACGTCCTACCACCACGGCGAAGTCTCCCTTCAGCAGACCATCAT 18449 Query 32133 CAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACA 32192 |||||| ||||||||||| || | || ||| | |||| || ||||| || ||| | Sbjct 18448 TGGCCTTGCCCAGAACTTTGTGGGCTCCAACAACATCAACTGCCTGGAGCCCTCCGGAAA 18389 Query 32193 GTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 || || | || || |||||||| || ||||| || | || ||||| Sbjct 18388 CTTCGGTTCTCGTCTTGCCGGTGGTTCAGACGCTGCCAGTCCTCGATACAT 18338 >seq3617 Length=84999 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| ||||| |||||||| ||||| || | || Sbjct 45419 TTCGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 45360 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| | Sbjct 45359 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 45300 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| || ||||||| || ||||| | ||||| || |||| ||| Sbjct 45299 ATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAG 45240 Query 27595 G 27595 | Sbjct 45239 G 45239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570279332340960