Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq855 91.5 1e-13 >seq855 Length=37984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 192/277 (69%), Gaps = 12/277 (4%) Strand=Plus/Plus Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 ||||| || || ||| |||| |||||| | | | ||| |||||| || || || Sbjct 2483 AGCTGGTCGACACCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCGCCAAAG 2542 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || | ||| ||||| || || || || || ||||| || |||| | |||| || ||| Sbjct 2543 TGTCGCCATTGGAATCCATAGACTGGGCCGAGGTCGCCGACTTCTCGGTGCGAGAGGCCG 2602 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA---CCCCCTT-CTC 30363 |||||| || || | || |||||| ||||||| ||||| | || ||| ||| Sbjct 2603 ACACTGTCCAGGAACTCACGTGAGCCGTTGCCGTCCCAAATCTTGATGCCCGCCTCGCTC 2662 Query 30364 AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30423 || | || ||| | ||| | ||||| ||||||||||||||| || | | |||||| Sbjct 2663 AGCG-GCAGAGAGGA-TGTGTTG-CCCTC-GACGAACCACAGCAGTTCGGCAATGACGGC 2718 Query 30424 CTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 | || ||||| | ||| || ||||||||||||| Sbjct 2719 --GCGAAGGAAGACGCGCTTCGTAGTGAGGAGGGGAA 2753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406288819584936