Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq855 91.5 1e-13
>seq855
Length=37984
Score = 91.5 bits (100), Expect = 1e-13
Identities = 192/277 (69%), Gaps = 12/277 (4%)
Strand=Plus/Plus
Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247
||||| || || ||| |||| |||||| | | | ||| |||||| || || ||
Sbjct 2483 AGCTGGTCGACACCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCGCCAAAG 2542
Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307
|| | ||| ||||| || || || || || ||||| || |||| | |||| || |||
Sbjct 2543 TGTCGCCATTGGAATCCATAGACTGGGCCGAGGTCGCCGACTTCTCGGTGCGAGAGGCCG 2602
Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA---CCCCCTT-CTC 30363
|||||| || || | || |||||| ||||||| ||||| | || ||| |||
Sbjct 2603 ACACTGTCCAGGAACTCACGTGAGCCGTTGCCGTCCCAAATCTTGATGCCCGCCTCGCTC 2662
Query 30364 AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30423
|| | || ||| | ||| | ||||| ||||||||||||||| || | | ||||||
Sbjct 2663 AGCG-GCAGAGAGGA-TGTGTTG-CCCTC-GACGAACCACAGCAGTTCGGCAATGACGGC 2718
Query 30424 CTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30458
| || ||||| | ||| || |||||||||||||
Sbjct 2719 --GCGAAGGAAGACGCGCTTCGTAGTGAGGAGGGGAA 2753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406288819584936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |