Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq3878 84.2 1e-11
>seq3878
Length=33396
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||||| | || | |||||||| |||||| || ||||| |||||
Sbjct 29588 CCGCCACGCAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTC 29529
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || ||||| || || || || || | ||||| ||||| || ||
Sbjct 29528 AGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 29469
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| ||| | || ||| | || ||||| ||| ||
Sbjct 29468 ATACCCTCCTTGTCTTGGAT-TTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAAC 29410
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || ||||| || ||||| || || || ||||| || |||||
Sbjct 29409 CTCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||||||| |||||| || ||||| || || || || || || |||| |||
Sbjct 28830 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 28771
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| || || || || || || | |||||| || || || || | ||||||||||| |
Sbjct 28770 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGG 28711
Query 34618 ATCTT 34622
|||||
Sbjct 28710 ATCTT 28706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314712883727414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |