Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq855 107 2e-18 >seq855 Length=37984 Score = 107 bits (118), Expect = 2e-18 Identities = 205/294 (70%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||||||| || ||| | ||||||| || || || |||||| |||||| || Sbjct 2356 GACGTAGAACTGCGCAAACA-TGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCGCCG 2414 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||||||||| | | ||| | | || | ||||||| ||| | ||| ||| | Sbjct 2415 GGTTCCACGCGCTGAGGAGGATGCGGCGATCGTAAGGGTTCGTCTTGAGCTTGTGGATAA 2474 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903 | | | || |||||||| | ||||| |||| ||||||| ||| || | || ||||| Sbjct 2475 CCT-CGGCAAGCTGGTCGACACCCTGACCCGTGTAGTCCGTCTTGGCGTCGACG-TACTC 2532 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 || |||||||||| ||| ||||| || ||||| ||||| | |||||| | || || Sbjct 2533 GGCGCCAAAGTGTCGCCATTGGAATCCATAGACTGGGCCGAGGTCGCCGACTTCTCGGTG 2592 Query 6964 TGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | || || ||||||| || || || || |||| ||||||| ||||| Sbjct 2593 CGAGAGGCCGACACTGTCCAGGAACTCACGTGAGCCGTTGCCGTCCCAAATCTT 2646 Score = 107 bits (118), Expect = 2e-18 Identities = 205/294 (70%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 ||||| ||||||| |||| || || || || ||||||| || || | || Sbjct 2646 AAGATTTGGGACGGCAACGGCTCACGTGAGTTCCTGGACAGTGTCGGCCTCTCGCACCGA 2587 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | |||||| | ||||| ||||| || ||||| ||| |||||||||| || ||||| Sbjct 2586 GAAGTCGGCGACCTCGGCCCAGTCTATGGATTCCAATGGCGACACTTTGGCGCCGAGTA- 2528 Query 34448 CGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCG 34505 || | || ||| ||||||| |||| ||||| | |||||||| || | | || ||| Sbjct 2527 CGTCGACGCCAAGACGGACTACACGGGTCAGGGTGTCGACCAGCTTGCCG-AGGTTATCC 2469 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 ||| | ||| ||||||| | || | | ||| | | |||||||||||||| || Sbjct 2468 ACAAGCTCAAGACGAACCCTTACGATCGCCGCATCCTCCTCAGCGCGTGGAACCCGGCGG 2409 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTC 34618 |||| |||||| || || || ||||||| | ||| || ||||||||| Sbjct 2408 ATCTAAAGAAGATGGCCCTGCCACCATGCCACA-TGTTTGCGCAGTTCTACGTC 2356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448237980905760