Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq3878 170 4e-37
seq1916 161 2e-34
seq3617 134 3e-26
seq245 104 5e-17
>seq3878
Length=33396
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| ||||| || || || |||||||| || || | || || | |||||
Sbjct 29345 AGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 29286
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| |||||||| ||||| ||||| | || |||||||||
Sbjct 29285 TCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 29226
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| || |||||||| || ||||||||| || |||||||||
Sbjct 29225 TGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTC 29166
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| || || | ||||||
Sbjct 29165 TTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134
Score = 158 bits (174), Expect = 3e-33
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| || || || |||||||| || || | || || | |||||
Sbjct 29117 AGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 29058
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| | |||||| ||||| ||||| | || |||||||||
Sbjct 29057 TCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 28998
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| ||| || |||||||||||||| |||
Sbjct 28997 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTC 28938
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||||||||| ||
Sbjct 28937 TTGCCAGTGAGAGTCTTGAC 28918
Score = 154 bits (170), Expect = 3e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||||||||| || |||||||| || || | ||||| | || ||
Sbjct 28833 AGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 28774
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||||||||| || || || || ||||| | || |||||||||
Sbjct 28773 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCC 28714
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||||| |||||||| |||||| || ||||| |||||||| |||
Sbjct 28713 TGGATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTC 28654
Query 211083 TTTCCCGT 211090
|| || ||
Sbjct 28653 TTGCCGGT 28646
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| ||||| ||||| || |||||||| ||||| ||||| | || ||
Sbjct 29573 AGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 29514
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||| ||||| || ||||| || ||||| || |||||||| || | || ||||||||
Sbjct 29513 TCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCT 29454
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || ||||| ||||| |||||||| |||||||| | || ||||||
Sbjct 29453 TGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTC 29394
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | ||||| ||||| | |||||
Sbjct 29393 TTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362
>seq1916
Length=1946
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | || ||
Sbjct 1151 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 1210
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| ||||| || ||||| || || | || |||||||||
Sbjct 1211 TCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1270
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 1271 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 1330
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 1331 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1362
>seq3617
Length=84999
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | |||||| || ||||||||||| ||||||||
Sbjct 45241 TTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATC 45300
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||| || |||||||| || | || ||||||||||||||||| || || || |||
Sbjct 45301 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45360
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 45361 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACGAA 45419
>seq245
Length=98725
Score = 104 bits (114), Expect = 5e-17
Identities = 183/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||| ||||||||||| | | ||||| ||||| || ||||| | ||
Sbjct 90041 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATAAAGGGGTTACCAGT 89982
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||| | ||||||| |||| ||| || ||| |||| ||||| | ||||| |
Sbjct 89981 CTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTTAGGGTCTTGCGACC 89922
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272
||| || | ||||||||| | ||| || ||||||||||| || ||| || |
Sbjct 89921 TTTGCCCATCTGCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGGC 89862
Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332
|||||| || ||| |||||||| | |||| |||| | |||| | || ||||| ||
Sbjct 89861 GAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTT 89802
Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGC 178359
||||||||| || | | |||||| |||
Sbjct 89801 CATGAAGAGATCGGGGATCCAGAGGGC 89775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159087276574670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |