Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3878 86.0 4e-12 seq1916 84.2 1e-11 >seq3878 Length=33396 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || ||||| ||||| || | || ||||| || | Sbjct 29362 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACGATTACGTTGGAGGTTGAGTCTTCT 29421 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || ||||| ||||| || ||| | || || || || Sbjct 29422 GACACTATCGACAACGTCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 29481 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || |||||||| |||| ||||| | ||||||||||| Sbjct 29482 CAGCGCCTGATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGCGATTACAAC 29541 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 29542 ATCCAGAAGGAGTCGAC 29558 >seq1916 Length=1946 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 1362 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1303 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 1302 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 1244 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || ||||| || || || || |||| ||||| | ||| ||||| Sbjct 1243 GCAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAA 1184 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1183 CATCCAGAAGGAGTCCAC 1166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337991647253864