Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3878 149 1e-30 seq1916 149 1e-30 seq3617 107 5e-18 seq245 104 6e-17 >seq3878 Length=33396 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||||||||| ||||| || |||| ||||| |||| || ||| | ||||| Sbjct 29345 AGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 29286 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || ||||| |||||||| || || || |||||||| Sbjct 29285 TCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 29226 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || ||||||||||| | ||| || || | |||||||||| Sbjct 29225 TGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTC 29166 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 29165 TTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| ||||| || |||| ||||| |||| || ||| | ||||| Sbjct 29117 AGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 29058 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | ||||| |||||||| || || || |||||||| Sbjct 29057 TCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 28998 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| |||| || || || | ||||| ||| Sbjct 28997 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTC 28938 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| || | ||| || Sbjct 28937 TTGCCAGTGAGAGTCTT 28921 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||||||||| || || || |||| ||||||||| || || | || || Sbjct 29573 AGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 29514 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| |||||||| || || || || ||||| || || ||||| ||||||||| Sbjct 29513 TCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCT 29454 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || ||||| ||||| || | || || || ||||| |||||| Sbjct 29453 TGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTC 29394 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 29393 TTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| ||||| |||| | || | || || Sbjct 28833 AGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 28774 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||||||||| || || || ||||| || ||||| |||||||| Sbjct 28773 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCC 28714 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| |||||||| || |||| || || || | ||||| ||| Sbjct 28713 TGGATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTC 28654 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 28653 TTGCCGGT 28646 >seq1916 Length=1946 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| |||| || || | || || Sbjct 1151 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 1210 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| |||||||| || || || |||||||| || || || |||||||| Sbjct 1211 TCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1270 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || | ||||| ||| Sbjct 1271 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 1330 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 1331 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1362 >seq3617 Length=84999 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| || || | ||||| || |||||||| || |||||||| Sbjct 45241 TTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATC 45300 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || ||||| || || || || |||||||| |||||||| ||| ||| ||| Sbjct 45301 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45360 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | || || ||||||||||||| || || | ||| Sbjct 45361 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACGAA 45419 >seq245 Length=98725 Score = 104 bits (114), Expect = 6e-17 Identities = 188/271 (69%), Gaps = 3/271 (1%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| |||| || | || || ||||||| || ||||| | || ||| Sbjct 90037 TTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCG 89978 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | |||||| |||| ||| || ||| || | ||| || || | ||| | | | ||||| Sbjct 89977 GTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTTAGGGTCTTGC-GACCTTT 89919 Query 193620 CCTTCCCT-CTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAG 193678 | || ||||||||| |||||||| |||| || || | |||||| ||| |||| Sbjct 89918 GCCCATCTGCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGGCGAG 89859 Query 193679 ACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCAT 193738 ||| || || || ||||| | |||| |||| || || | | ||||| |||||||| Sbjct 89858 ACCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCTTCAT 89799 Query 193739 GAAGAGGTCAGATGTCCAAATGGCGTAGAAA 193769 |||||| || | |||| | |||| ||||| Sbjct 89798 GAAGAGATCGGGGATCCAGAGGGCG-AGAAA 89769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192464612784452