Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1916 131 4e-25 seq3878 113 1e-19 seq3617 93.3 1e-13 >seq1916 Length=1946 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | || || Sbjct 1151 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 1210 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||||||||| || | ||||||||| | | ||| || ||||| || Sbjct 1211 TCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1270 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| || ||| || ||||| || ||||| Sbjct 1271 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 1330 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| ||||||| |||||| Sbjct 1331 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1362 >seq3878 Length=33396 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || |||||||| || || ||||||||||| |||| | ||| | ||||| Sbjct 29345 AGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCC 29286 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | |||||||| | | ||| || ||||| || Sbjct 29285 TCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 29226 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||||| | || | | ||||||| || || ||||| || || || Sbjct 29225 TGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTC 29166 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||| |||||| Sbjct 29165 TTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134 Score = 105 bits (116), Expect = 2e-17 Identities = 145/199 (73%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || |||||||| || || ||||||||||| |||| | ||| | ||||| || | Sbjct 29112 CAAG-TGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGA 29054 Query 151957 GGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || ||||| |||| | |||||||| | | ||| || ||||| || || Sbjct 29053 GCTGCTTGCCAGCAAAGATCAAGCGT-TGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 28995 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || |||||| | || | | |||| || |||||| || ||||| || || ||| Sbjct 28994 ATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTCTTG 28935 Query 152076 CCCGTGAGAGTCTTCACGA 152094 || ||||||||||| |||| Sbjct 28934 CCAGTGAGAGTCTTGACGA 28916 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| ||||| || ||||||||||||||| | || | || || Sbjct 29573 AGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 29514 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| || || | ||||||||| | | ||| || ||||| | Sbjct 29513 TCCAGTTGCTTT--CCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGT 29456 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| ||||| ||||| | || | |||| ||| ||| || || | ||||| | Sbjct 29455 CTTGGATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCG 29396 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | ||||| || |||| ||||| Sbjct 29395 TCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362 >seq3617 Length=84999 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | ||||| || || || ||||||||||| Sbjct 45241 TTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATC 45300 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||| | | ||| || ||||| || || || || |||||| | || Sbjct 45301 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45360 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| || ||| || ||||| ||||| || |||||||| || ||||||||||| Sbjct 45361 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCACGAA 45419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153756374252218