Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1916 156 3e-33 seq3878 125 5e-24 seq3617 113 3e-20 >seq1916 Length=1946 Score = 156 bits (172), Expect = 3e-33 Identities = 164/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| |||| || ||| |||| || Sbjct 1154 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 1213 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||||||||| ||||||| |||||||| || | || | || ||||| ||| Sbjct 1214 AGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1273 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| || |||||||| | || || |||| Sbjct 1274 ATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCT 1331 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | |||||||||||||| |||||||| |||||||| Sbjct 1332 TGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 1365 >seq3878 Length=33396 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||| ||||||||||| |||| || || | || || Sbjct 29342 ACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCG 29283 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||| || ||||| || | ||| | || ||||| ||| Sbjct 29282 AGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGA 29223 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||| | ||||| ||||| | ||| ||||||||| Sbjct 29222 ATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTCTTT 29163 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||| ||||| Sbjct 29162 CCAGTAAGCGTCTTGACGAAGATCTGCAT 29134 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||||||| || ||| |||| ||| Sbjct 29570 ACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCC 29511 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || |||| |||||||| || | || | ||| ||||| || Sbjct 29510 AGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGG 29451 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | | | || ||||| | || || ||||||| ||||||||||||| Sbjct 29450 ATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTCTTT 29391 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| || ||||||||||| Sbjct 29390 CCGGTCAAGGTCTTGACAAAGATTTGCAT 29362 Score = 109 bits (120), Expect = 4e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 28830 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 28771 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | |||||||||||| | ||| | ||| ||||| ||| Sbjct 28770 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGG 28711 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||| || | ||| || ||||| | || || ||||| Sbjct 28710 ATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTCTTG 28651 Query 44309 CCCGT 44313 || || Sbjct 28650 CCGGT 28646 Score = 107 bits (118), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || ||||| ||||||||||| |||| || || | || || Sbjct 29115 CACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTC 29056 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||||||||| || ||||| || | ||| | || ||||| ||| Sbjct 29055 GAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 28996 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| ||| || ||||| | || || ||| Sbjct 28995 GATCTTGGACTTGACATTGT--CGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTC 28938 Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327 || || ||||| ||||| |||| Sbjct 28937 TTGCCAGTGAGAGTCTTGACGA 28916 >seq3617 Length=84999 Score = 113 bits (124), Expect = 3e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || || |||||||| ||||| |||| Sbjct 45239 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGA 45298 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 45299 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45358 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 45359 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCAC 45416 Query 44326 GAA 44328 ||| Sbjct 45417 GAA 45419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359971279784886