Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1916 156 3e-33
seq3878 125 5e-24
seq3617 113 3e-20
>seq1916
Length=1946
Score = 156 bits (172), Expect = 3e-33
Identities = 164/214 (77%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| |||||| ||||||||||| |||| || ||| |||| ||
Sbjct 1154 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 1213
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||||||||| ||||||| |||||||| || | || | || ||||| |||
Sbjct 1214 AGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1273
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||||| || |||||||| | || || ||||
Sbjct 1274 ATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCT 1331
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
| |||||||||||||| |||||||| ||||||||
Sbjct 1332 TGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 1365
>seq3878
Length=33396
Score = 125 bits (138), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || ||||| ||||||||||| |||| || || | || ||
Sbjct 29342 ACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCG 29283
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||||| || ||||| || | ||| | || ||||| |||
Sbjct 29282 AGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGA 29223
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||| | | | |||||||| | ||||| ||||| | ||| |||||||||
Sbjct 29222 ATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTCTTT 29163
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||||| |||||||| |||||
Sbjct 29162 CCAGTAAGCGTCTTGACGAAGATCTGCAT 29134
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||| ||||||||||||||| || ||| |||| |||
Sbjct 29570 ACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCC 29511
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || || || |||| |||||||| || | || | ||| ||||| ||
Sbjct 29510 AGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGG 29451
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|| || ||| | | | || ||||| | || || ||||||| |||||||||||||
Sbjct 29450 ATTTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTCTTT 29391
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | |||||| || |||||||||||
Sbjct 29390 CCGGTCAAGGTCTTGACAAAGATTTGCAT 29362
Score = 109 bits (120), Expect = 4e-19
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || ||| |||||| ||||||||||| |||| ||| ||| |||| ||
Sbjct 28830 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 28771
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||| | |||||||||||| | ||| | ||| ||||| |||
Sbjct 28770 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCCTGG 28711
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | ||||| || | ||| || ||||| | || || |||||
Sbjct 28710 ATCTTGGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCAAGAGTGATGGTCTTG 28651
Query 44309 CCCGT 44313
|| ||
Sbjct 28650 CCGGT 28646
Score = 107 bits (118), Expect = 1e-18
Identities = 146/202 (72%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || || ||||| ||||||||||| |||| || || | || ||
Sbjct 29115 CACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTC 29056
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || ||||||||||| || ||||| || | ||| | || ||||| |||
Sbjct 29055 GAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 28996
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | |||||||||| ||| || ||||| | || || |||
Sbjct 28995 GATCTTGGACTTGACATTGT--CGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTC 28938
Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327
|| || ||||| ||||| ||||
Sbjct 28937 TTGCCAGTGAGAGTCTTGACGA 28916
>seq3617
Length=84999
Score = 113 bits (124), Expect = 3e-20
Identities = 136/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| || ||| | || || |||||||| ||||| ||||
Sbjct 45239 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGA 45298
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 45299 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45358
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||| ||||| ||||| |||||||||||
Sbjct 45359 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCAC 45416
Query 44326 GAA 44328
|||
Sbjct 45417 GAA 45419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359971279784886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |