Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3878 168 2e-36
seq1916 141 2e-28
seq3617 127 5e-24
seq245 91.5 4e-13
>seq3878
Length=33396
Score = 168 bits (186), Expect = 2e-36
Identities = 161/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || ||||| |||||||| || ||||| ||| ||||||
Sbjct 29137 CAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAATCATCAGAC 29196
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| |||||||||||||| || || |||||||| |||||||||
Sbjct 29197 ACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAA 29256
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || |||||||| ||||| | ||||| |||| || ||| ||
Sbjct 29257 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATC 29316
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || || || ||
Sbjct 29317 CAGAAGGAATCTACTCTCCACCTCGT 29342
Score = 150 bits (166), Expect = 4e-31
Identities = 153/198 (77%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || |||||||| || || || ||||| |||||||| || ||| ||||||||||
Sbjct 28916 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCG 28975
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||| |||||||| || || |||||||| ||||||||||| | |
Sbjct 28976 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGA 29035
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || |||||||| ||||| | ||||| |||| || ||| |||| || |
Sbjct 29036 TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGG 29095
Query 178111 AATCAACACTGCATCTTG 178128
|||| || || || ||||
Sbjct 29096 AATCTACTCTCCA-CTTG 29112
Score = 113 bits (124), Expect = 1e-19
Identities = 138/187 (74%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||| || ||||| || ||| || |||||||| ||||| ||
Sbjct 28646 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGTCC 28705
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || |||||||| || ||||| || ||||||||||| || ||
Sbjct 28706 AAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCAAG 28765
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || || || | || || |||| || ||| |||| || || || || || ||
Sbjct 28766 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA- 28824
Query 178125 CTTGTTT 178131
|||| ||
Sbjct 28825 CTTGGTT 28831
>seq1916
Length=1946
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| |||||||| || |||
Sbjct 1359 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 1300
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 1299 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 1240
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || | || || |||| || ||| ||
Sbjct 1239 CGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATC 1180
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 1179 CAGAAGGAGTCCACCCTCCACCTGGT 1154
>seq3617
Length=84999
Score = 127 bits (140), Expect = 5e-24
Identities = 136/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || || ||||| ||||| || ||| ||||| ||
Sbjct 45420 TTTCGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 45361
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| || |||||||| || |
Sbjct 45360 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTT 45301
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || ||||| || |||||| | || || |||| || ||| |||| ||
Sbjct 45300 GATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAA 45241
>seq245
Length=98725
Score = 91.5 bits (100), Expect = 4e-13
Identities = 180/264 (68%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187
||| ||||||||||| |||||| ||||| ||||| || ||||| || |||
Sbjct 90041 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCAT-AAAGGGGTTACCAG 89983
Query 214188 -CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGG 214246
|||| |||||| | || ||| || |||||| | ||||||||| | | |||
Sbjct 89982 TCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTTAGGGTCTTGCGAC 89923
Query 214247 CTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306
|| | ||| | |||||||| || || || | ||| |||||| |||||| ||
Sbjct 89922 CTTTGCCCATCTGCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGG 89863
Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366
| ||||| || |||||||||||| | ||| |||| | || || | | ||||| |
Sbjct 89862 CGAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCT 89803
Query 214367 TCATGAAAAGGTCGGAAGTCCAGA 214390
||||||| || |||| ||||||
Sbjct 89802 TCATGAAGAGATCGGGGATCCAGA 89779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203663987411452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |