Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3878 168 2e-36 seq1916 141 2e-28 seq3617 127 5e-24 seq245 91.5 4e-13 >seq3878 Length=33396 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| |||||||| || ||||| ||| |||||| Sbjct 29137 CAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAATCATCAGAC 29196 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || || |||||||| ||||||||| Sbjct 29197 ACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAA 29256 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | ||||| |||| || ||| || Sbjct 29257 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATC 29316 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || || || Sbjct 29317 CAGAAGGAATCTACTCTCCACCTCGT 29342 Score = 150 bits (166), Expect = 4e-31 Identities = 153/198 (77%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || |||||||| || || || ||||| |||||||| || ||| |||||||||| Sbjct 28916 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCG 28975 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||| |||||||| || || |||||||| ||||||||||| | | Sbjct 28976 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGA 29035 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || |||||||| ||||| | ||||| |||| || ||| |||| || | Sbjct 29036 TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGG 29095 Query 178111 AATCAACACTGCATCTTG 178128 |||| || || || |||| Sbjct 29096 AATCTACTCTCCA-CTTG 29112 Score = 113 bits (124), Expect = 1e-19 Identities = 138/187 (74%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| || ||||| || ||| || |||||||| ||||| || Sbjct 28646 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGTCC 28705 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || |||||||| || ||||| || ||||||||||| || || Sbjct 28706 AAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCAAG 28765 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || || |||| || ||| |||| || || || || || || Sbjct 28766 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA- 28824 Query 178125 CTTGTTT 178131 |||| || Sbjct 28825 CTTGGTT 28831 >seq1916 Length=1946 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 1359 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 1300 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1299 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 1240 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || |||| || ||| || Sbjct 1239 CGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATC 1180 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1179 CAGAAGGAGTCCACCCTCCACCTGGT 1154 >seq3617 Length=84999 Score = 127 bits (140), Expect = 5e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || || ||||| ||||| || ||| ||||| || Sbjct 45420 TTTCGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 45361 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| || |||||||| || | Sbjct 45360 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTT 45301 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| || |||||| | || || |||| || ||| |||| || Sbjct 45300 GATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAA 45241 >seq245 Length=98725 Score = 91.5 bits (100), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187 ||| ||||||||||| |||||| ||||| ||||| || ||||| || ||| Sbjct 90041 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCAT-AAAGGGGTTACCAG 89983 Query 214188 -CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGG 214246 |||| |||||| | || ||| || |||||| | ||||||||| | | ||| Sbjct 89982 TCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTTAGGGTCTTGCGAC 89923 Query 214247 CTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306 || | ||| | |||||||| || || || | ||| |||||| |||||| || Sbjct 89922 CTTTGCCCATCTGCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTAGCAGTCGG 89863 Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366 | ||||| || |||||||||||| | ||| |||| | || || | | ||||| | Sbjct 89862 CGAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCCACTCTCT 89803 Query 214367 TCATGAAAAGGTCGGAAGTCCAGA 214390 ||||||| || |||| |||||| Sbjct 89802 TCATGAAGAGATCGGGGATCCAGA 89779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203663987411452