Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1916 174 1e-38 seq3878 125 7e-24 seq3617 123 2e-23 seq274 96.9 3e-15 >seq1916 Length=1946 Score = 174 bits (192), Expect = 1e-38 Identities = 180/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || ||||| || || | ||||| || || ||| ||||||||| ||||| ||||| Sbjct 1132 ACCACCACCGCGCAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1191 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| |||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| | Sbjct 1192 GGACAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGG 1251 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809 ||| | || |||||||||| ||| || ||| || | || | |||||| |||| Sbjct 1252 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGAC 1309 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 1310 TCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 1363 >seq3878 Length=33396 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || || || |||||||| ||||| |||||||| Sbjct 29360 CCTCCGCGCAGGCGAAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 29301 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||||||||| || |||||||| || ||||| | || Sbjct 29300 AGAGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCGGGAGGG 29241 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || | | ||| | | | ||||| || || || Sbjct 29240 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATGATTCAAC 29182 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || || |||||||| ||||| |||||||| Sbjct 29181 CTCAAGCGTGATCGTCTTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || || ||||||||| ||||| || ||| Sbjct 29588 CCGCCACGCAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTC 29529 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || ||||| || ||||| ||||||||||| ||||| | ||| Sbjct 29528 AGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 29469 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| |||||| ||| ||| | | | |||||| ||||| || Sbjct 29468 ATACCCTCCTTGTCTTGGATTTTGGACTT-GACGTTGTCGATAGTGTCAGAAGACTCAAC 29410 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| ||||| || || |||| ||||| || || || ||||| Sbjct 29409 CTCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 29362 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| ||||||||| Sbjct 28848 CCACCACGGAGGCGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 28789 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| || || ||||| || || | || Sbjct 28788 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGG 28729 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | | |||||||||| ||| || ||||| Sbjct 28728 ATACCCTCCTTGTCCTGGATCTTGGACTTCA 28698 Score = 102 bits (112), Expect = 8e-17 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||||| ||||| |||||||| Sbjct 29132 CCACCACGGAGACGAAGCACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 29073 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| || || |||| ||| || ||||| | || Sbjct 29072 AGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGG 29013 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||| ||||| | Sbjct 29012 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAGGACTCTA 28955 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| | || || || || || || || ||||| |||| Sbjct 28954 CCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 28916 >seq3617 Length=84999 Score = 123 bits (136), Expect = 2e-23 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| |||||||| | || || ||||||||||||||||| | Sbjct 45239 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGA 45298 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 45299 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45358 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 45359 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTGCCCGTCAGGGTCTTCAC 45416 Query 41851 GAAA 41854 |||| Sbjct 45417 GAAA 45420 >seq274 Length=111205 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || ||||||||||| |||| || |||||| |||||||| ||| Sbjct 88124 CGCATCGCCCCCCGCTCCGGCCTCGCTGCCAAGAACTTCATCGACACTGGCGCCGGCGTC 88065 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||||||||| | |||| || | ||||||||||||| ||| Sbjct 88064 ATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 88012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462278815989600