Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1201 98.7 1e-15
>seq1201
Length=295393
Score = 98.7 bits (108), Expect = 1e-15
Identities = 353/543 (65%), Gaps = 17/543 (3%)
Strand=Plus/Plus
Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044
||||| || | | ||| || ||||| || || || | |||||||| || || |||
Sbjct 156520 CCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCGGGCATGAGACCACGCTTC 156579
Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104
|| | ||| || || | |||||| | || ||||| || |||||||||| |||||
Sbjct 156580 TTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAG 156639
Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT-TACGA-ATCCATTTCTGCACCCACT 17162
|| | | || | |||| | || | |||||| | || ||||| | |||| |
Sbjct 156640 GCAACGAGGCGCTGGGCGAAGGTGGA--CTTTGTGTCCGTGATCCAGCGCAAGGCCCAGT 156697
Query 17163 CGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA-AT---TTCTCTTTT 17218
| || || | ||||| || || || ||||| || || | || | | ||
Sbjct 156698 CAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGTACGCTGG- 156756
Query 17219 TCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTT 17277
| ||| || | || || || |||||||| ||| ||| | |||||||| |||||
Sbjct 156757 ----GCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGAATGTT 156812
Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTA 17337
|||||| ||||| || ||||| ||||| || || || | | || ||||| | |
Sbjct 156813 CTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGACTTCGCCAGA 156872
Query 17338 GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATAT 17397
||| || || | || || || || |||||||||||| |||||||| || || | ||
Sbjct 156873 GAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAAT 156932
Query 17398 ATGCTTAATGAAATATTTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTT 17454
|| ||||| || || || || || || | | |||||| | | ||| ||
Sbjct 156933 GTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTT 156992
Query 17455 GGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCA 17514
||| | ||| | || || | ||||| ||| ||| | ||||| || ||||| | |||
Sbjct 156993 GGACAAATCAATCTCCTCAGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCA 157052
Query 17515 AAT 17517
|||
Sbjct 157053 AAT 157055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517535481983520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |