Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1201 98.7 1e-15 >seq1201 Length=295393 Score = 98.7 bits (108), Expect = 1e-15 Identities = 353/543 (65%), Gaps = 17/543 (3%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 ||||| || | | ||| || ||||| || || || | |||||||| || || ||| Sbjct 156520 CCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCGGGCATGAGACCACGCTTC 156579 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | |||||| | || ||||| || |||||||||| ||||| Sbjct 156580 TTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAG 156639 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT-TACGA-ATCCATTTCTGCACCCACT 17162 || | | || | |||| | || | |||||| | || ||||| | |||| | Sbjct 156640 GCAACGAGGCGCTGGGCGAAGGTGGA--CTTTGTGTCCGTGATCCAGCGCAAGGCCCAGT 156697 Query 17163 CGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA-AT---TTCTCTTTT 17218 | || || | ||||| || || || ||||| || || | || | | || Sbjct 156698 CAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGTACGCTGG- 156756 Query 17219 TCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTT 17277 | ||| || | || || || |||||||| ||| ||| | |||||||| ||||| Sbjct 156757 ----GCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGAATGTT 156812 Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTA 17337 |||||| ||||| || ||||| ||||| || || || | | || ||||| | | Sbjct 156813 CTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGACTTCGCCAGA 156872 Query 17338 GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATAT 17397 ||| || || | || || || || |||||||||||| |||||||| || || | || Sbjct 156873 GAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAAT 156932 Query 17398 ATGCTTAATGAAATATTTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTT 17454 || ||||| || || || || || || | | |||||| | | ||| || Sbjct 156933 GTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTT 156992 Query 17455 GGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCA 17514 ||| | ||| | || || | ||||| ||| ||| | ||||| || ||||| | ||| Sbjct 156993 GGACAAATCAATCTCCTCAGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCA 157052 Query 17515 AAT 17517 ||| Sbjct 157053 AAT 157055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517535481983520