Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq211 159 4e-34 >seq211 Length=153984 Score = 159 bits (176), Expect = 4e-34 Identities = 434/659 (66%), Gaps = 14/659 (2%) Strand=Plus/Plus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 |||||||||| | ||| || |||| | || |||||| ||||| ||||||||||| ||| Sbjct 109213 GGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATC 109272 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 ||||| || | || || || | || | ||||| || || ||||| || Sbjct 109273 CAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 109332 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 || | ||| | | | || | |||||| || || | ||| |||| | | || || Sbjct 109333 TCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGG 109392 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | || | |||||||| || | || | | ||| || Sbjct 109393 CGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGG 109452 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--AT 54293 ||| ||| ||||| | |||||||| |||| ||| ||| ||| ||||||| || Sbjct 109453 GTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGG 109512 Query 54294 TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353 | ||| |||||| || || || |||||||| || || | ||||| || | | Sbjct 109513 TGGACATT--TAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAG 109570 Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413 | || ||||||||||| ||| || ||| |||||| | ||||| ||| |||| | Sbjct 109571 TGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCT 109630 Query 54414 GGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 ||| | | ||| || || || || || || || |||||||| || || || || Sbjct 109631 -GTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTC 109689 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTAC 54528 || | | ||||| ||||| || | || | ||| || |||| || || Sbjct 109690 GACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATG----CCAAC 109745 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588 || || ||||| | ||||||||| ||||| || | |||||| | | || || | Sbjct 109746 GGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAG 109805 Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 54647 |||||| | ||||| || ||||| || || || | ||| ||||| || ||||||| Sbjct 109806 ATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAAA 109864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709992742720