Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq211 159 4e-34
>seq211
Length=153984
Score = 159 bits (176), Expect = 4e-34
Identities = 434/659 (66%), Gaps = 14/659 (2%)
Strand=Plus/Plus
Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055
|||||||||| | ||| || |||| | || |||||| ||||| ||||||||||| |||
Sbjct 109213 GGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATC 109272
Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115
||||| || | || || || | || | ||||| || || ||||| ||
Sbjct 109273 CAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 109332
Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175
|| | ||| | | | || | |||||| || || | ||| |||| | | || ||
Sbjct 109333 TCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGG 109392
Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235
|| ||||| || ||||| || | || | |||||||| || | || | | ||| ||
Sbjct 109393 CGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGG 109452
Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--AT 54293
||| ||| ||||| | |||||||| |||| ||| ||| ||| ||||||| ||
Sbjct 109453 GTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGG 109512
Query 54294 TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353
| ||| |||||| || || || |||||||| || || | ||||| || | |
Sbjct 109513 TGGACATT--TAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAG 109570
Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413
| || ||||||||||| ||| || ||| |||||| | ||||| ||| |||| |
Sbjct 109571 TGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCT 109630
Query 54414 GGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472
||| | | ||| || || || || || || || |||||||| || || || ||
Sbjct 109631 -GTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTC 109689
Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTAC 54528
|| | | ||||| ||||| || | || | ||| || |||| || ||
Sbjct 109690 GACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATG----CCAAC 109745
Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588
|| || ||||| | ||||||||| ||||| || | |||||| | | || || |
Sbjct 109746 GGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAG 109805
Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 54647
|||||| | ||||| || ||||| || || || | ||| ||||| || |||||||
Sbjct 109806 ATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAAA 109864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593709992742720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |