Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1112 246 4e-60 >seq1112 Length=320824 Score = 246 bits (272), Expect = 4e-60 Identities = 520/777 (67%), Gaps = 63/777 (8%) Strand=Plus/Minus Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604 ||||| ||||| || | | || |||| |||||||| | | ||||||||||| || | Sbjct 256465 CATCTTCATGGCAATCGTCTTATGCGGGTCGTAGCCCTTGACCACAAAGTCCTCCACCTT 256406 Query 145605 GAAGTCATCTATGTCCTCCACCCGCCTCAG-------GATCCTGAGCCTGGGAAAGGGCC 145657 || |||| ||| | | ||||||||| |||| ||| | || ||| || Sbjct 256405 CCAGCCATCAATG-CTGCAACCCGCCTCCCTGTTGTTGATCTCCAGCATCGGGAAGTCCC 256347 Query 145658 GGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCG 145716 | || |||| | || ||||| | ||| || | |||||||||| ||| ||||||||| Sbjct 256346 GCGG-CTCCCGCTCCAGCTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAAACGTGCGCG 256288 Query 145717 TCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG 145776 || |||| |||||| ||| | || || | ||| | | | | || | ||||| Sbjct 256287 TCGCCCATGACGTGCGTGAGGCTGCCAGGAACCAGGTCGGACGCGCGCGCAATCATGTGT 256228 Query 145777 GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGC 145836 |||||||| | |||||| || |||||||| ||||| || ||||||||||| | |||||| Sbjct 256227 GTCAGCAGCGCGTAGCTCGCAATGTTGAACGGCACGCCGAGCCCCATGTCGCAGGAGCGC 256168 Query 145837 TGGTACAGCTGGCAGGAGAGCT--CCC-----------------------CGCC-CGCC- 145869 |||||||| |||||| || | ||| |||| |||| Sbjct 256167 TGGTACAGTTGGCAGTGCAGGTGTCCCTTGGGCTTCTCGTCCGTCGACGGCGCCGCGCCG 256108 Query 145870 ------------------ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 |||||||||||| | | |||||| |||||||||||||| Sbjct 256107 CGTGCCCGCGGGTACGAGACGTAGAACTGGGCAAACATGTGGCACGGCGGCAGGGCCATC 256048 Query 145912 GCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTC 145971 ||||||||| |||||||| ||| |||| | || | | | | ||||||| || Sbjct 256047 TTCTTCAGGTCCGCGGGGTTCCACGCGCTGAGCAGGATGCGGCGGTCGTAGGGGTTCGTC 255988 Query 145972 TTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTG 146031 |||| || || | || ||||||||| |||||||| || ||| || ||||| Sbjct 255987 TTGAGCTTGTGGATGACCTCGGCGAGCTGGTCGACGCCCTGGCCTGTGTAGTCCGTCTTT 255928 Query 146032 GAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCC 146091 | ||| ||||| | || || ||||| | ||| ||||| || |||||||| || || || Sbjct 255927 GCGTCGACGTATTCCGCGCCAAAGTGTCGCCATTGGAAGCCATAGACGGGGCCGAGATCG 255868 Query 146092 CCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCC 146151 ||| || | ||| || ||| | | | ||||||| || ||||| |||||| ||||| Sbjct 255867 CCGACTTCGCGGTGGGAGAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCC 255808 Query 146152 CAGATCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTC--CGTGGACCCCCTGATGAA 146207 |||||||||||||| |||||| ||| || || ||| | |||| ||| || ||| Sbjct 255807 CAGATCTTGACGCCGGCCTCGCTGAGGGC-CA---GAGACGACGTGTTGCCCTCGACGAA 255752 Query 146208 CCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 |||||| ||||| | | ||| | | |||||| | || |||||||| ||||| Sbjct 255751 CCAGAGGAGCTCGGCAATGACGGCGCGGAGGAAGACGCGTTTTGTGGTCAGGAGGGG 255695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590065263998560