Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1201 399 2e-106
seq643 143 3e-29
seq1544 129 6e-25
seq835 123 3e-23
seq442 123 3e-23
seq428 122 9e-23
seq632 98.7 1e-15
>seq1201
Length=295393
Score = 399 bits (442), Expect = 2e-106
Identities = 584/811 (72%), Gaps = 20/811 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||
Sbjct 157055 ATTTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCTGAGGAGATTGATTTG 156996
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | || |||| | ||| | ||||||
Sbjct 156995 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTC 156937
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| |||||||| ||||||||||||||| ||||| ||||| |||||
Sbjct 156936 TCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACCTGGTTGAGCG 156877
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
|||| || || || ||||| |||||||||| |||||||||||||| |||||| ||
Sbjct 156876 TTTCTCTGGCGAAGTCCAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGAT 156817
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927
||||||| | ||||| || | || || ||||||||||| ||| | | || ||
Sbjct 156816 GGAGAACATTCACTCCGAGACTTACTCCCTTCTCATCGACACCTACATTAAGGAGC-CTG 156758
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| || | | || | | || ||||||||||| || || || ||| || ||||||
Sbjct 156757 CCCAGC-GTACCTA--TCTCTTCAACGCCATCGACACCATCCCCTGCATCCGTAAGAAGG 156701
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
| || ||||| ||||||||||| | | || | || || |||||| | ||||||| || |
Sbjct 156700 CTGACTGGGCCTTGCGCTGGATCACGGACACAAAGTCCACCTTCGCCCAGCGCCTCGTTG 156641
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
|||| || |||||||||||| ||||||| || ||||||| |||| || |||||||
Sbjct 156640 CCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCA 156581
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || || ||||||||||| || || ||| |||||||||||||||| | || ||||
Sbjct 156580 AGAAGCGTGGTCTCATGCCCGGTCTAACCTTCTCCAACGAGCTCATCTCCCGTGATGAGG 156521
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC--GC 117225
|||| || |||||||||||| | |||| | || || ||| || || ||| ||
Sbjct 156520 GTCTCCACACCGACTTTGCCTGCCTTCTGTACTCTCACCTGAAGCACCGCCCCAGCAAGC 156461
Query 117226 GGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGA 117285
| | | | | ||| || || ||| || ||| |||||||| ||||| |||||
Sbjct 156460 AG-GTGATTGA-GGATATTATCGTCGATGCTGTCAAGATCGAGCAAGAGTTCCTGACCGA 156403
Query 117286 AGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGT 117344
|| ||||| |||| || ||||| | || | | | |||| ||||||||||||||
Sbjct 156402 GGCTCTGCC-TTGCGCCCTCCTGGGCATGAACTCCAACCTGATGAAGCAATACATCGAGT 156344
Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404
||||||| || | ||| || ||| || | | || |||| |||||| || ||||||
Sbjct 156343 TCGTCGCTGATCGTCTGTTGGTCGCTCTCGGCAACGACAAGGTCTACAAATCGGCCAACC 156284
Query 117405 CGCTGGACTTTATGAACCTCATCTC-CTTGG 117434
| | ||||| ||| | |||||| |||||
Sbjct 156283 CCTTCGACTTCATGGAGAACATCTCTCTTGG 156253
>seq643
Length=80414
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 65460 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 65401
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 65400 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 65341
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || |||| ||||||||| ||||||||||
Sbjct 65340 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 65281
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| ||| || || || || ||||| || | || ||
Sbjct 65280 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCGCCTGCGTGGAGG 65234
>seq1544
Length=892
Score = 129 bits (142), Expect = 6e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| |||||||||||||| ||||| || || || || |||||||| |||| |||||
Sbjct 838 AAGATGCAAATATTCGTTAAAACCCTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGT 779
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | | |||| |||||| || || | ||||| || || || ||| | ||
Sbjct 778 TCTGACACCATCGACAACG-TCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGA 720
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||||||| || |||| ||| || |||||||| || |||| || || || |||||
Sbjct 719 CCAGCAACGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGTACTCTTGCTGACTA 660
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||||| | || || ||||| ||
Sbjct 659 CAACATCCAGAAGGAATCAACCCTTCATCTTGT 627
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || ||||| || ||| |||| ||||| | |
Sbjct 379 ATGCAGATCTTTGTGAAGACTCTTACCGGTAAAACTATTACCCTCGAGGTCGAGAGCTCA 320
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || || | || || ||||| || || |||| ||
Sbjct 319 GACACCATTGACAACGTT-AAGGCTAAGATCCAGGATAAGGAGGGTATTCCTCCGGATCA 261
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||||| || |||||||| |||| | || || || |||||
Sbjct 260 GCAGAGGTTGATCTTTGCGGGTAAGCAGCTGGAAGACGGAAGGACTCTTGCTGATTACAA 201
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| | || || || || ||| |||| ||||||| |||
Sbjct 200 TATCCAGAAGGAGTCGACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGC 152
>seq835
Length=459924
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || |||||| |
Sbjct 159332 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 159391
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| | |||||||| || |
Sbjct 159392 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 159451
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || |||| ||||||||| |||||||||||||||||||
Sbjct 159452 ATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 159511
Query 40879 G 40879
|
Sbjct 159512 G 159512
>seq442
Length=625744
Score = 123 bits (136), Expect = 3e-23
Identities = 144/192 (75%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760
|| || || ||||| ||||| ||||||||| |||| || || | | ||||| | |
Sbjct 417631 GTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGCGACACTATCGAC 417572
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| ||||| || || | || || |||||||| ||| | |||||||| || |||||
Sbjct 417571 AACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCAT 417513
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
|| ||| ||||| ||||| || |||| || |||||| |||||||||||| ||||||||
Sbjct 417512 CTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCCGACTACAACATTCAGAAGGA 417453
Query 40881 GGCCACGCTGCA 40892
| | || || ||
Sbjct 417452 GTCTACCCTTCA 417441
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| || || ||| | || || || | |
Sbjct 417415 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACGATTACCTTAGAGGTGGAGTCGTCA 417356
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || || | ||||| |||||||||||| | |||||
Sbjct 417355 GACACAATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 417297
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || ||||| || |||| ||||||||| |||||||||
Sbjct 417296 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAA 417237
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||| ||||||||| | || || || | ||| | |||
Sbjct 417236 CATTCAGAAGGAGTCGACCCTCCACTTGGTGCTTCGC 417200
Score = 111 bits (122), Expect = 2e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | ||
Sbjct 417928 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 417869
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || || | || || |||||||||||| | ||||||
Sbjct 417868 GATACCATCGACAATGTGAAGTCTAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 417809
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || || | ||| ||||| ||||| || || | |||||| | || ||||||
Sbjct 417808 CAACGTCTTATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGTCTGATTACAAC 417749
Query 40870 ATCCAGAAGGA 40880
|||||||||||
Sbjct 417748 ATCCAGAAGGA 417738
>seq428
Length=571
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40684 CGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAA 40743
|| |||||||| || ||||| ||||| || || || |||||||||||| |||| |||||
Sbjct 571 CGCAAAATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAG 512
Query 40744 GCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803
|| ||||| | | | | ||||| || |||| |||||||| || ||||| ||
Sbjct 511 AGCAGCGACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCG 452
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|| ||||| || | || | ||| || || ||||| || || | |||||| | |||
Sbjct 451 GATCAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGAT 392
Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||| ||||||||||| | || || ||||| ||
Sbjct 391 TACAATATCCAGAAGGAATCTACTCTTCATCTTGT 357
>seq632
Length=500
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||||||||| ||||| | || || || |||
Sbjct 23 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCCAGT 82
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | || | || |||| |||||||| || || ||| | |||||
Sbjct 83 GATACTATAGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCCCCTGACCAA 142
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| || || |||||| |||| || | | || | ||||||||||
Sbjct 143 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAAC 202
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || || ||||| ||
Sbjct 203 ATCCAGAAGGAGTCTACCCTTCATCTTGT 231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515209127464640
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