Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq442 125 8e-24
seq643 113 5e-20
seq428 96.9 4e-15
seq1544 91.5 2e-13
seq835 84.2 3e-11
>seq442
Length=625744
Score = 125 bits (138), Expect = 8e-24
Identities = 139/183 (76%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | || || || |||| || |||||||| ||||||||
Sbjct 417452 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAA 417511
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||||| || | || |||||| ||| ||| || |||| |||
Sbjct 417512 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGA-CGT 417570
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||||| || ||||| |||| |||||||| ||||| || || ||||| |
Sbjct 417571 TGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGA 417630
Query 43171 CAA 43173
|||
Sbjct 417631 CAA 417633
Score = 109 bits (120), Expect = 6e-19
Identities = 166/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
|| || ||||| | | || | |||||| || | || |||||| ||||| |||||
Sbjct 417183 TACTGGCCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAG 417242
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| | || || || |||| || |||||||||||||| || || || ||||||||||||
Sbjct 417243 TCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCG 417302
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129
| || | || |||||||||| ||| || |||| ||| | | | ||||| |||
Sbjct 417303 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCTGACGA 417361
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || | || || || ||||| || || ||||| || || || |||||
Sbjct 417362 CTCCACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415
>seq643
Length=80414
Score = 113 bits (124), Expect = 5e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || || ||||| || | || || || |||| || |||||||| ||
Sbjct 65264 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 65323
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
||||| || || ||||||||||||| || | || |||||||||| ||| || |||
Sbjct 65324 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 65383
Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166
| | | | |||||| || ||||| || | ||||| || || ||||| || |||
Sbjct 65384 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 65443
Query 43167 TTTACAAAGATTTGCAT 43183
|| || ||||| |||||
Sbjct 65444 TTGACGAAGATCTGCAT 65460
>seq428
Length=571
Score = 96.9 bits (106), Expect = 4e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || ||||||||||| |||| || || | || || |||||||||||||||||
Sbjct 375 TCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAA 434
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111
|| | |||||||| || | || | | || |||| | ||| | || || |||| |
Sbjct 435 ATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGT-CTTGAATCTTGGTCTTGACATT 493
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||||| || || |||| ||||||||||| || ||||| || || ||
Sbjct 494 GTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCAC 553
Query 43172 AAAGATTTGCATTTT 43186
|| || ||||||||
Sbjct 554 GAAAATCTGCATTTT 568
>seq1544
Length=892
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || |||||||||||||| ||||||| |||| || ||||||||||| || ||
Sbjct 188 CTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAA 247
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | | |||||| || | || | | |||||| ||| || | || | | | |||
Sbjct 248 GATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCC-TGGATCTTAGCCTTAACGT 306
Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | ||||| |||| || || |||| || || ||||| || || || ||||
Sbjct 307 TGTCAATGGTGTCTGAGCTC---TCGACCTCGAGGGTAATAGTTTTACCGGTAAGAGTCT 363
Query 43168 TTACAAAGATTTGCAT 43183
| |||||||| |||||
Sbjct 364 TCACAAAGATCTGCAT 379
>seq835
Length=459924
Score = 84.2 bits (92), Expect = 3e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | || || || |||| || |||||||| || ||||| |
Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | ||||||||||||| || | || |||||||||| ||| || |||| |
Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||||| || || || || | || ||||| || ||||| || ||||| || |
Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333
Query 43174 A 43174
|
Sbjct 159332 A 159332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571806420965920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |