Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq442 125 8e-24 seq643 113 5e-20 seq428 96.9 4e-15 seq1544 91.5 2e-13 seq835 84.2 3e-11 >seq442 Length=625744 Score = 125 bits (138), Expect = 8e-24 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || || || |||| || |||||||| |||||||| Sbjct 417452 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAA 417511 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||| ||| ||| || |||| ||| Sbjct 417512 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGA-CGT 417570 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||||| || ||||| |||| |||||||| ||||| || || ||||| | Sbjct 417571 TGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGA 417630 Query 43171 CAA 43173 ||| Sbjct 417631 CAA 417633 Score = 109 bits (120), Expect = 6e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || || ||||| | | || | |||||| || | || |||||| ||||| ||||| Sbjct 417183 TACTGGCCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAG 417242 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || || || |||| || |||||||||||||| || || || |||||||||||| Sbjct 417243 TCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCG 417302 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129 | || | || |||||||||| ||| || |||| ||| | | | ||||| ||| Sbjct 417303 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCTGACGA 417361 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | || || || ||||| || || ||||| || || || ||||| Sbjct 417362 CTCCACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 >seq643 Length=80414 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | || || || |||| || |||||||| || Sbjct 65264 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 65323 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| || || ||||||||||||| || | || |||||||||| ||| || ||| Sbjct 65324 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 65383 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | |||||| || ||||| || | ||||| || || ||||| || ||| Sbjct 65384 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 65443 Query 43167 TTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 65444 TTGACGAAGATCTGCAT 65460 >seq428 Length=571 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || ||||||||||| |||| || || | || || ||||||||||||||||| Sbjct 375 TCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAA 434 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || | |||||||| || | || | | || |||| | ||| | || || |||| | Sbjct 435 ATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGT-CTTGAATCTTGGTCTTGACATT 493 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||||| || || |||| ||||||||||| || ||||| || || || Sbjct 494 GTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCAC 553 Query 43172 AAAGATTTGCATTTT 43186 || || |||||||| Sbjct 554 GAAAATCTGCATTTT 568 >seq1544 Length=892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||||||||| ||||||| |||| || ||||||||||| || || Sbjct 188 CTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAA 247 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | |||||| || | || | | |||||| ||| || | || | | | ||| Sbjct 248 GATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCC-TGGATCTTAGCCTTAACGT 306 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || |||| || || ||||| || || || |||| Sbjct 307 TGTCAATGGTGTCTGAGCTC---TCGACCTCGAGGGTAATAGTTTTACCGGTAAGAGTCT 363 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 364 TCACAAAGATCTGCAT 379 >seq835 Length=459924 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||||| || || || || | || ||||| || ||||| || ||||| || | Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333 Query 43174 A 43174 | Sbjct 159332 A 159332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571806420965920